Gene detail

Detail information of GWHGAAEX018749/evm.TU.scaffold_98.7

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743883168\|ref\|XP_010909340.1\|	0	PREDICTED: uncharacterized protein LOC105035472 [Elaeis guineensis]
trEMBL	tr\|M0U3X5\|M0U3X5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P27180_001}
TAIR	AT1G68580	1.00E-113	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000094	324397	331873	+

Transcript Sequence
>GWHTAAEX018749 ATGGGTTCCGAGGTCAAGGCTTGGGTGCGATGGGAGGAGGAGACGGTGTCCAACGATCGTGGGAGGCGAGAGGTGCACTACTATGTCCGGGATGATTTTGGCAATCGGGCTCTTGCTGTTGTAGGAAGAGAGAAGAGCGCTCGTCACATGGTGTATGCTGTTCCGGCTCTGTTTTTTCATTCTCTCATCAGGATTCCGGCCACAGATTCTCCTGCATCTGCCGCGTCGGCTGCGGCAGCAGCTTTGCCTTCGGATCTGAGGCTGCGATCTCGGAGGCAGGCTGTCGATTGGCTCTCCTTGCTTGTTTCAGATTCCACCGCATATGGATTATCCCCGGTGTTGGACAGATTCTCAGATGTTGAAGTTGCTACACCCGCCTGTATTCCTAATTCCAAGGTACCCTCATGCCAAATGGGACGACAATCTGAAAAATTTTCATGGCTAGGTTCTTCATGGGAATGCAGAAAACGTTGGAAACATTACCAATCCTTTCGCAGAAATGGAATTACAATATCTGTTCATGATTTCATCTACGTTCTAGCGGAAGATAATAAGAGGCTTGTTGCTTATGTTGAAGATTTATACGAGGATGTGAGGGCCAATAATATGGTTGCGGTACGCTGGTTTCATAAAGTTGATGAAGTTAGTATTGTTTTGCCGCCCGATGCTATTGACAGAGAGATTTTCTTTACTCTTTGTCTTCAAGATTTCAGTGTTGAATGCATAGATGGGTTGGCAGCAGTACTTGGTTCTGAGGATTTTGACAAGTTTCAGAAGGAGGCACATCACAGGCACAGAGTCTGGGACCCTTACCTTTGCCGCAGGCAGATAGATGATGACTGTACCCTTAAGTCATTTGATATTACTCAAGTTCAAGGATACTGGGCTCAGGACCTCCTCCGGTCAATGTATCCTTCCTATCTTAAATTAAGACTGAAGATAAAAGGCTGTGGTTCTGCCCCGGAGGGCAAGAAAATTAATTCTGATTTTCGGGTTATTTGCAAGAGAAAACTCTGCTCGGTTAGTGGATCAATTGATGTTGCAGTGCCGGTAAAAGATGTGGGAAATTTGGAAGGTTTCGGCGTTGGAAACAGATTGGAAAAGCCTGCCCGAGTTGACTCCTCTGTTGCACTCGAGATGAGGAAAGAGCTTGTAAAGCCGACAAATGTGATAGCTCCTGGGCATGAAATTGAACTTCTTTCTCAGGACAGTGGCATCAGGGGATGCTGGTTTTGTTGTATGGTTCTTAAATGTCATCGCGATAAGATCAAGGTTCGATACCGAGATGTTGAGGATGCGGATGGAAGTGGCAATTTAGAGGAATGGGTTTCCACTTCGAGGACTGCTGCTCTGGACAAATTAGGCATTCGAATGTGCGGAAGACCGATATTTCGCCCAAGCCTTTTGAAGAAGGATGAAAAATTATCATCCTGTTATGAAGTAGGTAAAGCTGTGGATGCATGGTGGCATGATGGGTGGTGGGAAGGGATTGTTATCAACAATGGAAGTGAAGGGAAGATTCATGTATATTTTCCAGGTGAGCAACGAGCGTCCATTTTTTCCCCAGTGGACTTGAGGCCCTCTCATGAGTGGGTCGACAATAAGTGGAACCAGCTGAAGGAAAGGCCAGATATCGCTGACCTCTTACTCTCAGAACTAGACCGGGAAAAGTGCAGCGACTGCATTACTTTCCAAGGTTCCCCATCTGATGCACAAACAGAGTCTGTGCTAATTCAAGAGAAAGGAGATCCTTTGCATGCTGTAACAGCCTGCGGGTCACCTCCTGTTCGGAACTCACCATTTCCAGACCTTTTCAACGGTTACATCCCAGATGGCTTGAAGTGGAGCTCTTCAAGGAAAAGAACGAGCGGGAGGTTATTTTCGGCGCAGATTTTCGGAAGCAAAAGAAGGGTGGCGAGCACTGGTCGCAGGGGCGGCGGAGAATTGGACAGGGCTAAAGATCGGAATGCGTTCCCGATACCTAAATCATTGAAAGGCCTGGAGCGAGAGAACTGCAAGGGCGGAAGTCGGGAGACCTTGTTTGGGTCTTCGATGCCTCTTTGCTCAAACATGTTCACTATTATTCTCCAGACTTCAAGGCCTCCTAGTCTTTCTCTCTTTTCTTCTTCTTCCTTCCTCGCTCGCATTATTTTGATCTTCATGCTGCCTATCTACTATATGATTATGAAGATCAACATCGACTGCTCTGGCTGCTATCGCAAAATTCGAGAAACTCTTCTCAAGATGCAAGAGTTGGAGAGCCACTTCATAGAGAAGAAGAAAGGAAGAGTGAGTGTCTGCGGGGCTTTCAACCCGCAGACAACGGCGATAAAGATGAGAAAAACAATCAATCGTCGGGTCGAGATTCTAGATATCAAGGAAATTTCTGCGGGCGGTGGAGAAGCGGCTGAGGGTGGCACTGAACAGGGGCGCTAG

Network for GWHGAAEX018749

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.17	BAH	170	279	3.10E-07
PF05641.11	Agenet	394	446	1.30E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030001	Biological Process	metal ion transport
GO:0046872	Molecular Function	metal ion binding
GO:0003682	Molecular Function	chromatin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	179.430
SRP064423	SRR2545915	Juvenile tuber	164.520
SRP108465	SRR5643513	five period of Gastrodia elata	94.190
	SRR5643514	five period of Gastrodia elata	98.230
	SRR5643515	five period of Gastrodia elata	131.700
	SRR5643524	five period of Gastrodia elata	99.740
	SRR5643525	five period of Gastrodia elata	179.480
	SRR5643528	five period of Gastrodia elata	172.500
	SRR5643658	five period of Gastrodia elata	149.730
	SRR5643659	five period of Gastrodia elata	198.400
	SRR5643660	five period of Gastrodia elata	192.390
	SRR5643661	five period of Gastrodia elata	192.640
	SRR5643662	five period of Gastrodia elata	149.430
	SRR5643663	five period of Gastrodia elata	136.030
	SRR5643664	five period of Gastrodia elata	233.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	137.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	106.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	125.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	149.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	132.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	163.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	153.360
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	131.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	92.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	150.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	99.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	99.300
SRP279888	Gastro	Gastrodia elata tuber	131.20
	Juven	Juvenile tuber	113.96
	Mother_Gastro	Mother tuber of Gastrodia elata	386.46
	Mother_Juven	Mother tuber of Juvenile	534.53