Detail information of GWHGAAEX018752/evm.TU.scaffold_98.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 4.00E-75 | MADS box transcription factor |
| nr | gi|672129868|ref|XP_008788451.1| | 5.00E-93 | PREDICTED: MADS-box transcription factor 23-like [Phoenix dactylifera] |
| Swissprot | tr|Q6EP49|MAD27_ORYSJ | 1.00E-86 | MADS-box transcription factor 27 |
| trEMBL | tr|M0SCJ8|M0SCJ8_MUSAM | 5.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P07310_001} |
| TAIR | AT4G37940 | 4.00E-75 | AGAMOUS-like 21 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000094 | 929025 | 937435 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018752
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 1.20E-24 |
| PF01486.16 | K-box | 87 | 168 | 4.70E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.180 |
| SRR2545915 | Juvenile tuber | 3.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.730 |
| SRR5643514 | five period of Gastrodia elata | 62.880 | |
| SRR5643515 | five period of Gastrodia elata | 30.340 | |
| SRR5643524 | five period of Gastrodia elata | 49.290 | |
| SRR5643525 | five period of Gastrodia elata | 1.540 | |
| SRR5643528 | five period of Gastrodia elata | 2.870 | |
| SRR5643658 | five period of Gastrodia elata | 2.560 | |
| SRR5643659 | five period of Gastrodia elata | 5.000 | |
| SRR5643660 | five period of Gastrodia elata | 4.920 | |
| SRR5643661 | five period of Gastrodia elata | 3.320 | |
| SRR5643662 | five period of Gastrodia elata | 1.800 | |
| SRR5643663 | five period of Gastrodia elata | 1.270 | |
| SRR5643664 | five period of Gastrodia elata | 1.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.72 |
| Juven | Juvenile tuber | 12.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 51.69 | |
| Mother_Juven | Mother tuber of Juvenile | 57.06 |