Gene detail

Detail information of GWHGAAEX018753/evm.TU.scaffold_98.19

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|530781002\|ref\|YP_008432810.1\|	4.00E-15	hypothetical protein N186_07295 [Thermofilum sp. 1910b]
KOG	KOG1932	0	TATA binding protein associated factor
nr	gi\|743823825\|ref\|XP_010932628.1\|	0	PREDICTED: transcription initiation factor TFIID subunit 2 [Elaeis guineensis]
Swissprot	tr\|Q8LPF0\|TAF2_ARATH	0	Transcription initiation factor TFIID subunit 2
trEMBL	tr\|F6GTI2\|F6GTI2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43191.1}
TAIR	AT1G73960	0	TBP-associated factor 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000094	1175662	1296287	-

Transcript Sequence
>GWHTAAEX018753 GTAGAAGCCAGGATCACTATCTGAAGTCTCGCGCTTTTGTTCGGGTTTTCATGGCGAAGCCTAGGAAACCAAAGAGCGACGAACAAAAACTAGAGAGTTCTGGAGGAGTCGCTCTCCACCAGAAACTATGTATATCAGTTGACATGGAGAATAGAAGAATTTACGGGCACACTGAAATAAAAGTTGTTGTCCCAGAGAGTGGCGACATTGCTTTACTTGCAGAAAACATAATAATCAGCAATATAACTGTAGATGGGCAGGATGCTGAATTTGAGTGCTTTCCTCATTGCGAGCTTGCTGATGATGAGGGCAGTTGGTGCTCAGTATCTTGCTCAAAGTCAGCTGCTGACGTTGCATGCTCAATTTACTTCTCATCTCTGAATAGAGAAACATCTCCAAGTCTTATTATTAGATGCTGTAATAAATCAAAAGAGTCGCAAAGCTATCTGGAACAAAATTTGCCAGAGAATATTATTCAGAATTCTTGTGAAGAGCAGGTTGTTAATGCTTGTAGTGAACATCCAGAGGATAAGAATGTGAAGATAATTTGTATAGATTACTGGTTAGATCAGGTAGACACTGGAATTCACTTTGGGGAACATATTCTTCATACTGATAATCAGATAAAACGTGTCCATTGCTGGTTCCCCTGCATGCATACGTTTTCACAGAACTGCTTGTTTGACCTTGAGTTCACAGTTAGTTCTAATTTCGTTGCAGTCAGTAATGGTGATTTGCTGTATCAGGTATTAAGCAGTGATGACCCTCCTCGCAAAACATATATCTATAAGTTGAATGTTCCCGTTTGCGCTGCGTGGATATCTTTGGCTATAGCTCCATTTGAAGTTCTTCCTGATAGTCATATTGGCATTGTATCTCATATGTGTTTATCTTCAGATTTGCAAAAGCTTCAGAATACCGTCGGCTTTTTCCACAATGCATTTAGCCACTATGAAGATTACCTTTCCACATCATTTCCATTTGGTTCATACAAGCAAGTGTTTATCCCACCTGAATTCTCCGTGTCTTCTGTGAACATGGGGGCATCAATGTGCCTCTTTAGCTCCAAACTCTTATTTGATGAGAAGGTTATTGATCAGACCATTGAAACTAGAATAAAACTTGCCTATGCCCTTGCAAGACAATGGTTTGGAGTCTACATAACTGCAGAGGAGTTAGATGATGAATGGTTATTGGAAGGCCTTGCAGGCTTTCTTACTGATTCATTCATAAAACGATTTCTGGGAAATAATGAGGCGAGGTATCGGCGTTACAAGGATAATTGTGCAGTTTGCAAAGCTGATACTTGTGGGGCAACTGCCTTGTGCTCTGCTGCTGCTTGTAGTAAATTGTATGGAACTCAAACTATTGGTGTCTATGGAAAAATTCGTTCTTGGAAAGCTACAGCAGTACTTCAGATGTTAGAAAAGCAAATGGGTCCAGACTCTTTTCGTAAGATTCTTCAAACCATTGTATTCCGTGCTCCAGATCCTTACAGTTCTGCAAGAGCTCTTAGTACAAAGGAGTTCAGGCATCTGGCAAATAAAGTTGGCAACCTAGAGCGTCCTTTTCTAAAGGAATTCTTTCCTCGTTGGATAGAATCTTGTGGATGCCCTGTGTTAAGGATGGGACTCTCTTATAACAAGAGGAGGAATGTAGTTGAATTGGCAGTTCTGAGAGGCTGCACAGCAAAGGTTGGATCTGCTTATGGTTGCAATGCATGTAATGAAAACCAAGATAGTGATAATGGTTGGCCTGGAATGATGAGCATTCGAATTCATGAGCTTGATGGGATGTATGACCACCCAAGTTTGCCTATGTCTGGTGAAACTTGCCAGCTACTAGAGATACCGTGCCATTCAAAGCTTGCTTCTAAACGAATACAGAAACCTAAGAAGAGTTCTAAAGCTGATGCATCTGATGATAATGCAGATATTGCTGCTAGTCAAGATATGCGAACAAGCATGGATTCACCATTGTTATGGATACGAATAGACCCTGAAATGGAATTTTTGGCAGAAGTTCATTTTCATCAGCCCGTTCAGATGTGGATTAATCAGCTAGAAAAAGAAAAAGATGTGGTTGCTCAAGCACAGGCAATTGAAGCATTAAAATGTCTGCCGCAGCATTCATTTGCAGAAGTTAATGCACTGAACAACTTTCTATGTGATTCAAAGGCATTTTGGAGAGTTAGAGTTGAAGCAGCATATGCGTTGGCACATACAGCTTCTGAGGAATCCAATTGGGCTGGTTTATATCATTTAATCAAGTTCTACAAGAATAGAAGATATGATGCTGATATTGGATTGCCTAGGCCTAATGACTTTCATGATGTTCCAGAGTACTTTGTTCTTGAGGCCATTCCACATGCAGTGGCCTTGGTTAGAGCTGCAGACCATAAAAGCCCGAGGGAAGCAGTTGAGTTTGTTTTGCAGCTTCTGAAGTACAATGATAATAGCGGGAATCCGTACTCAGATGTTTATTGGCTTACCGCTCTGGTTCGCTCTATTGGTGAACTTGAGTTTAGTCAGCAGAGTTTCTCCTTCATGCCTTCTCTACTCAAATGCATCGATCGACTTCTGCAATTTGACAGGCTTATGCCAAGTTATGATGGAATCCTTACAATCAACTGCCTTCACACCCTTGTCCGAATCGCTCTGAAAATGTCGACTATACTTACAATTGATGATGTCTGTGAAATGCTAAAACCTTTTAGAAATGTTGAGAGAGCATCCTGGAATGTTCGAATTGAAGCAAACAAAGCACTTCTAGATCTGGAGTACTATTGTAAAGGCCTAGACGCAGCTATCTGTTTGTTTATTGAGTTAACGGCGGATGAATCATCTCTGAGAGGACAAACAAAGCTAGCCGTCCATTTGATGCAGCTATGTCAAATAAACTCTGAATCTGAAAGCAACAACTCTGTTTCTTGTGCCACCTTGGTCTCTCTTCTACGGCTGCTTGCAAGCAAAAAGGCCTTCAATAATATCTTCCTTCGACACCACTTGTTTTGCATTTTACAGATTGTTGCCGGGAGGACACCAACACTCTTCGGACGTACAAAAGTTAGAGAAAAGTCTGCAGCAGCGGGTGCGGAATCCTTGGGCGAGCAGCCAACCCGATCGGCATCATTGAAGATGAAGATCACGAGGACTCGGGAAGTTCTAAATGAAACTCCAAACCGTTCGGTTGACGCCCCTTCGATTCTTGGGCCAGCCAAGGAGGGCGACACCATCTCTAACCGCAGCGAGGGAAGGATGAGCATATTAAAGATAAGAGTCAGGCAGCCCCCGTCGTCCAGCAGGGCGGGTGGCGGTGACGGATTCCCCCAGCAATCCCGTGTGGCGCCTCCAAACGAGGCCGAGGTGGGGCCCAGCAGCTCCGTCTCCGTAGATGCACCTATGAAGGGGCCTGTCGAACCTCCGTGCACCACCAGCAACAACCAAATTGCCGACGAAGCGAATTCTTCCTGTGACCGTGAATCCCGGGCGACATCTGGCATTCTTCGCAGAAAATTGGCAAATGGCGGCGGCGGCGACGGCGACGAAGCTGGCAGGGAGCTGCAGTGCACGGCTAATTCTAGCAGAATAGACGAGGGGTTGGCGAAGAGGAAGAAAGAAAAGGACAGGGAAGGCAGGAAGCACAAAGGACCCGAATATTTGGAGCGCAAGCGCCTGAAGAAAAAGAGGAAACTAATGGAGAAAGGGCTCGCCGGCAAATTGCAGGAATGCAGCCCATCTTTGGCGAACCTGGACCAGTTGCAGGAGAGCAATGCGCAGGACGTGCCCAAACCCACAGAAGCTGTGGCCAATGCCTTGCAGGGTAGCAGCAAGGGAACGAAATTTAAGATCAGGATCAGGAATCAGAGCGGTGGATTCAGCTAATGGGGAATTTATTTACACATGGAAAAAAGCATTTGAAAAGGCCTGACGCTTTTTTCCTTGGCTTTACCTTTCTCATTAATTTATTCTTCTTGATTCGTTTTGGGGTTCCGTTGTTTCTCTGACCTTTAAATTGACGCAGGCTCATCTGAAGGAATTAGAAAAAATGCCTTGTAAACCGGTAGTTTTTAATGCATATATGATATGATTGAGTGCACATGAGAAGTTTTATTTGTTTTAATCTGTATATGATTCTGTGCTTTGAATCTTTGGTTGCAGCTGTCTGCGGGGCGGATGACAACCCCCCACTGCCCCTTCCCTCTGTACAAAAATGCAGAATTTGGAGTGGGCGTTAGCTATTTCTTTTCCATTAGTTACTGTTTCAATTATTGGGTTCAAATTTTTTTAGCACATTTATTTTTTCTTTGGAGCTCACCTAATTTCAAGGAAGTATCAGCTTATTACTTTCATTTATGGTGATTAATTTAAATATATTAAACATGTATCATATTTC

Network for GWHGAAEX018753

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01433.19	Peptidase_M1	301	491	1.30E-15

Protein Sequence

>GWHPAAEX018753
RSQDHYLKSRAFVRVFMAKPRKPKSDEQKLESSGGVALHQKLCISVDMENRRIYGHTEIKVVVPESGDIALLAENIIISNITVDGQDAEFECFPHCELADDEGSWCSVSCSKSAADVACSIYFSSLNRETSPSLIIRCCNKSKESQSYLEQNLPENIIQNSCEEQVVNACSEHPEDKNVKIICIDYWLDQVDTGIHFGEHILHTDNQIKRVHCWFPCMHTFSQNCLFDLEFTVSSNFVAVSNGDLLYQVLSSDDPPRKTYIYKLNVPVCAAWISLAIAPFEVLPDSHIGIVSHMCLSSDLQKLQNTVGFFHNAFSHYEDYLSTSFPFGSYKQVFIPPEFSVSSVNMGASMCLFSSKLLFDEKVIDQTIETRIKLAYALARQWFGVYITAEELDDEWLLEGLAGFLTDSFIKRFLGNNEARYRRYKDNCAVCKADTCGATALCSAAACSKLYGTQTIGVYGKIRSWKATAVLQMLEKQMGPDSFRKILQTIVFRAPDPYSSARALSTKEFRHLANKVGNLERPFLKEFFPRWIESCGCPVLRMGLSYNKRRNVVELAVLRGCTAKVGSAYGCNACNENQDSDNGWPGMMSIRIHELDGMYDHPSLPMSGETCQLLEIPCHSKLASKRIQKPKKSSKADASDDNADIAASQDMRTSMDSPLLWIRIDPEMEFLAEVHFHQPVQMWINQLEKEKDVVAQAQAIEALKCLPQHSFAEVNALNNFLCDSKAFWRVRVEAAYALAHTASEESNWAGLYHLIKFYKNRRYDADIGLPRPNDFHDVPEYFVLEAIPHAVALVRAADHKSPREAVEFVLQLLKYNDNSGNPYSDVYWLTALVRSIGELEFSQQSFSFMPSLLKCIDRLLQFDRLMPSYDGILTINCLHTLVRIALKMSTILTIDDVCEMLKPFRNVERASWNVRIEANKALLDLEYYCKGLDAAICLFIELTADESSLRGQTKLAVHLMQLCQINSESESNNSVSCATLVSLLRLLASKKAFNNIFLRHHLFCILQIVAGRTPTLFGRTKVREKSAAAGAESLGEQPTRSASLKMKITRTREVLNETPNRSVDAPSILGPAKEGDTISNRSEGRMSILKIRVRQPPSSSRAGGGDGFPQQSRVAPPNEAEVGPSSSVSVDAPMKGPVEPPCTTSNNQIADEANSSCDRESRATSGILRRKLANGGGGDGDEAGRELQCTANSSRIDEGLAKRKKEKDREGRKHKGPEYLERKRLKKKRKLMEKGLAGKLQECSPSLANLDQLQESNAQDVPKPTEAVANALQGSSKGTKFKIRIRNQSGGFS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03128	TAF2	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0008237	Molecular Function	metallopeptidase activity
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.580
SRP064423	SRR2545915	Juvenile tuber	14.780
SRP108465	SRR5643513	five period of Gastrodia elata	14.400
	SRR5643514	five period of Gastrodia elata	11.770
	SRR5643515	five period of Gastrodia elata	14.700
	SRR5643524	five period of Gastrodia elata	11.490
	SRR5643525	five period of Gastrodia elata	11.170
	SRR5643528	five period of Gastrodia elata	9.670
	SRR5643658	five period of Gastrodia elata	11.450
	SRR5643659	five period of Gastrodia elata	12.670
	SRR5643660	five period of Gastrodia elata	12.540
	SRR5643661	five period of Gastrodia elata	11.630
	SRR5643662	five period of Gastrodia elata	13.240
	SRR5643663	five period of Gastrodia elata	12.920
	SRR5643664	five period of Gastrodia elata	13.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.660
SRP279888	Gastro	Gastrodia elata tuber	18.07
	Juven	Juvenile tuber	26.73
	Mother_Gastro	Mother tuber of Gastrodia elata	22.02
	Mother_Juven	Mother tuber of Juvenile	26.61