Gene detail

Detail information of GWHGAAEX018754/evm.TU.scaffold_98.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428320931\|ref\|YP_007118813.1\|	2.00E-20	putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112]
KOG	KOG0027	1.00E-46	Calmodulin and related proteins (EF-Hand superfamily)
nr	gi\|695051182\|ref\|XP_009413607.1\|	3.51E-54	PREDICTED: probable calcium-binding protein CML18 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q5ZCK5\|CML16_ORYSJ	2.00E-48	Probable calcium-binding protein CML16
trEMBL	tr\|M0TRE8\|M0TRE8_MUSAM	1.00E-54	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P17950_001}
TAIR	AT1G18210	1.00E-46	Calcium-binding EF-hand family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000094	1468368	1501099	+

Transcript Sequence
>GWHTAAEX018754 GAAACCAATGGAACGGAACCTTAGCTTTAGATGACTATAGTTGAAAACCGATCAGTACGGCACTAAGCCGACGCGTGTATTACGCGGAGCGCCGTCAATCCGCATCCGACACATGGCATCTGATCACACAACACCGACACGACCACGCGTCATCACGAGGGGCATCTTTCACCCGGGACAACAACCCTTCTCACATACACAATCCCACCCCTAACGCCCTACGCGTTCACCGCGCGTTCAACAAAGCGATCCCCCTCCTATTTATATTCAATTCCATCACTCCACAAATCCCATCTCATAAGAACAAACCGATAACCAGAAGAAAATCCACCTTCCAATCGTTCAATGGAGAGCGCACCAGCCGGGATTCGCAGCATGGAAGAAGTGCAAAAGGTATTCAACCGCTTCGACGCCGATGGTGACGGAAAGATAACAGCATCGGAGCTTGGAAAGGTCCTCCGCGCCCTTGGATCCGACGTCTCAAGCGAAGAGCTTAGCTCCATGATCCAGGAAATGGACGCCAATCGGGATGGATACGTCGATCTCGGTGAATTCGCTCGATTCAACCGCCCCGGCGATGCTCCTGCTCAGGGGGATGCCGATATCAAGGACGCGTTCAATATATACGATCTGGATGGGAACGGCCTGATATCTGTGAAGGAGCTTCATCAGGTGCTCGGGAGGCTGGGTGAGAGATGCTCCCCTAAGGATTGCTCGCGGATGATCCAATCCGTCGATTCCGACGGCGATGGATGCGTCAATTTTGATGAATTTAAGAAGATGATGGGGGGCCTTTCGGACGGAGAAAAAATGGAGCCAGCTGATCAGATTCAGAGTTGTTCGTAGGCAGTGCTGTAGAGGAGGAGCCAATTCAGGAGGTGGATCATTCTGTTGCAGTTTAGATAGACTTTACTTTTTTTATTATTGTTATTTAAGTGAGATTGAGAGACTTTTATATTTATTTTATTTCAGTTTGTAATAAATGAATTATGTATGAATTTTACTTTCTGCACTTGATCTGAGTTACTACCTCTTTTAATTGTCATATTATATTGTGATGTGGATGTTATAATCATG

Network for GWHGAAEX018754

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module13

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.5	EF-hand_7	12	73	4.50E-13
PF13499.5	EF-hand_7	85	147	9.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	214.380
SRP064423	SRR2545915	Juvenile tuber	158.080
SRP108465	SRR5643513	five period of Gastrodia elata	386.570
	SRR5643514	five period of Gastrodia elata	161.570
	SRR5643515	five period of Gastrodia elata	776.660
	SRR5643524	five period of Gastrodia elata	155.520
	SRR5643525	five period of Gastrodia elata	1346.040
	SRR5643528	five period of Gastrodia elata	465.850
	SRR5643658	five period of Gastrodia elata	560.240
	SRR5643659	five period of Gastrodia elata	326.110
	SRR5643660	five period of Gastrodia elata	137.740
	SRR5643661	five period of Gastrodia elata	263.770
	SRR5643662	five period of Gastrodia elata	403.630
	SRR5643663	five period of Gastrodia elata	321.630
	SRR5643664	five period of Gastrodia elata	1404.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	347.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	321.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	267.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	254.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	318.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	416.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	468.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	417.550
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	152.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	455.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	280.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	280.190
SRP279888	Gastro	Gastrodia elata tuber	215.13
	Juven	Juvenile tuber	56.29
	Mother_Gastro	Mother tuber of Gastrodia elata	397.76
	Mother_Juven	Mother tuber of Juvenile	111.25