Gene detail

Detail information of GWHGAAEX018760/evm.TU.scaffold_98.29

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1953	Targeting complex (TRAPP) subunit
nr	gi\|695069180\|ref\|XP_009381560.1\|	PREDICTED: trafficking protein particle complex subunit 9 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FY61\|TR120_ARATH	Trafficking protein particle complex II-specific subunit 120 homolog {ECO:0000305}
trEMBL	tr\|F6H3V1\|F6H3V1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46840.1}
TAIR	AT5G11040	TRS120

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000094	1732057	1772349	-

Transcript Sequence
>GWHTAAEX018760 TTCAGCTCTGATAAGTACATAGATTCCAAGCAGTTGAACAAAATACCTCACTTTCGCATCCAGCTTCCTTTAGGCTACTCTGTTATCTTCAATCAGCCCTACAGTAGCCAGGTTCGATCTCAAAGGTTCCATTTACCTACCAACGATCTCGTTCCCCTCCTTAGCTGACGCTGCTATGGAGCCTGATGCGAGCATGGAAACAGGATCCATGATCCGCATCGCCGTTCTCCCCATCGGCGGCCCGATCCCTCACCGGTTGTTGCGAGAATACGTCTCGATGCTGTCGCGCCACACGCGGATTGACCTATCGTCCATTGATTCATTCTATTCGGAGCACCAGAAGAGCCCCTTCACGCACCAGCCATGGGAGAGCGGCAGCCTGCGCTTCAAGTACATGGTTGGCGGTGCTCCTCCTAGCCCATGGGAAGACTTCCAAGCCCATCGTAAGATCCTTGCCGTCATTGGCCTCTGCCACTGCCCATCTTCTCCGGATCTTGATCTCGTAATCGATCAGTTTGCTTCCGTCTCCAAGGGTTATGGCTCCGCGCTCGCAAAGCGATTGTTTGCGTTCTCACCCAGCAACGATCAGTTAGTAGAGGGACGAGAAAAGGAAAACAGCATTATTTTGTTTCCTCCATCTGATCAACAAGCACATGAACTTCAAATGCTTACAATGACTCAAGATCTTGCAGCTACATTGTTGATGGAGTTTGAAAAATGGGTTCTACTTGCAGAATCTACTGGGACTATCTTGAAGACGCCTTTAGATTCTCAATCCAATTTAAGCTCTGAGGAGGTGATAAAAGCTAAAAAGAGGAGGCTTGCTCGAGCTCAGAAAACAATAGGGGATTATTGTTTATTAGCTGGATCACCTGCTGATGCAAATGCACATTTTGTTACGGCAATAGAACTGGCCAGGTTAACTGGAGATGTGTTCTGGCATGCTGGTGCTTTGGAGGGGAGTGTTTGTGCTCTGCTGGTTGATCGCATGGATGAAAGAGATTCTCTTTTAGAGGAGGAGGTCAAGTATCGCTATTACACCGTCATTCAACTTTATAAGAGATCATATTTACAAGATAATGCACAGAGGGTTTCAACAGTCACCTTTGAGCTTGAAGCTCAATTAAAGCTAGCTAAGTACCTATGCAGACAACCTATTGCAAAGGAAGTAGTAGAGCTGTTGACGAATGCTTCTGATGGTGCAAAATCCTTGATTGATGCTAGTGATTGCCTGATATTGTATGTTGAGATAGCTAGATTATTTGCAGCTCTTGGTTATCAGCGCAAAGCAGCATTTTTCTCTAGGCAGGTTGCACAGTTGTACTTGAAACAAGATAATACTTTTGCTGCTATCAGTGCCATGCAAGTTTTGTCACTGACAGCCAAGGCTTACCATGTACAAAGTAGGGGAACTAATCAAAAGCTGCATGGATTGTCCCTTGATCTTGGATCAAATTATGCTGAAAGTGGAAAAATCCAACCTCTGTCAATAATTTCCTTGTTTGAGTCTCATTGGAGCACTCTGCAAATGGTTGTTTTAAGGGAGGTACTGATGTCCTCTGTTCGTGCTGGGGATCCCCTTGCTGCATGGAGTGCAGCAGCTCGTCTTCTTAGATCATTTTATCCACTCATTACTCCTGCAGGACAGAGTGGCCTTGCAAGCTCTCTCACAAATTCTGCAGACAGGCTACCGTCTGGAACACGTTGTGCTGACCCAGTGCTTCCATTCATAAGGTTGCATTCATTCCCAATACATCCTTCCCAAGTGGAGATAATTAAGAGGTACCCAGATAAAAAGGATTGGTGGAATGATTCGGTTCCTTCAGGCCCATTTATCTACACGCCCTTCAGCAAGGGTGGTGCAATCGACTGTAACAAGCAAGAGTTAACATGGGTTGTTGGGGAACCTGTTCAAGTTTTAGTGGAATTAGCCAATCCCTGTGCTTTTGAGTTAACGGTTGAAAGCATCTATCTTTCCATTCATTCTGGAAACTTTGATGCATTTCCTGTCAGTGTAAATCTTCCACCGAACACTGCCAAGGTTGTTTTGTTGTCAGGAATTCCAACAAAGGTTGGTCACGTTTCAATCCCTGGATGCATTGTACACTGTTTTGGTGTCATCACAGAGCACCTTTTCAGAGATGTTGATAACTTGCTTCTTGGAGCAGCTCAAGGCCTTGTTCTTTCTGATCCTTTCAGATGCTGTGGTTCCGTTAAGTTGAAAAATAATGTTGTCCCAAGCATTTTGGTGGTACCACCCTTGCCATTATTAGTTTCTTCTGTGGTAGGCGGCGATGATGCTACAATTTTGTATGAAGGTGAAGTTCGTGACATTTGGATACGCCTAACCAATGCTGGAACAGTGCCAATTGAACAAACGCACATATCCTTATCAGGGAAAAATAAAAATTCCGTGATTTCTATTGCGCGTGAAGCTATAAATTCTGCCCTGCCATTGAAACCTGGTGCAGAGGTAAGTCTTACAGTGACTATTAAAGCTTGGAAGCTTAGCCTTACAGATCCTGATCAAGAACTTCCCAAAAACAATTCTGGAACTATGAGGGGCGTATCTAAGGAAGGATTAAACCCATTCCTAGCTATCCACTATGCTGGGCCGACGTCATACTCGGATTTGCCGCAGAACAGTAGCGATTCATCTGCATCAACTCCGGGAAGGCGCTTGATTGTTCCACTGCATATATGTGTTGCGCAGGGGCTGCGCTTTGTGAGGGCCCGCTTGCTGTCAATGGAAATGCCGGCGGCCGTTCATCAGCCCCTCCCTGGGCTGGATGTGATTGCCGCTGCAAGCAGCGGCACGGATAGCAGTTTAGGGAATTGGGAGCTGCGGCTCCTTGAGCTCGAACTTTCAAACCCAACGGACGTCGCCTTTGACGTCCGTGTCTCCATCCAGCCGGACTCATCCTCTCAAGCAAACGCTGATCTGCGGAAGACGAGAATCGGCCGAGATTGCTCAGCGCGCATTCTTATTCCGCTGGAGCACTCCAAGCTGCCCCCCAAAAAAGGCGAACACTATTCGTCGGCAGGCAAACCGAATGCCGCCAAGGCGGAGCTGGCCGCCTGCATTTCCGCCCTTGTTTCAGGAATAAAGGTGAGGTGGCGGTCCGGCAGAAACAGCTCCGGGGAGCTGAGCATTAAGGACGCTGTCCAGGTGGCCCTGCAGGCGCTGGTGTCCGACGTTCTGCTTCCTGATCCTTTGACGTTCAGATTCAGGCTGCTAACAACCAGCAGCAGCAGAGTGGATGACTGCAAGACAAATCGCCGCCTTGGTTCCGTCTTGTCTCATGAGATGACTGACATGGAAGTCCTGGTTCGGAACAACACCGGCGAGCCGATTCGAGCGAGCCTTTGTTTAAGCTGTAGGGATGTGGCCGGGAACAACTGCATCGAGGGGAACAATCCGACCGTTCTATGGGCAGGTGTTGTGAGGGGAGTGAGTTTGGAGATTCCTCCGCTGGAGGAAGTGGCGCATCGCTTGGCGCTGTATTTTGTGGTGCCCGGAGATTACACTCTTCTGGCCGCCGCTGTTATGGTGGATATGGATGCGGAGGACCCCATCGTATGCCGCGCCTCTCCTTTCAAAATCAACGTAACAGTTTTGCGATCGCTTCACCTGCGGCTTCTCGTTTCTCTCGCTGCGCAACCCGTAGAGCAGTTGGCAAACACTTTCAACGTTATTTGATATATTCTCATGTAAGAATACTTATGATGGGAAAATATTATAATAAATTACAAACATAAAAGTTCAATGAATAAAAAAAATCAGGTGTTAAAGTGACATTAAGAATTTAATGCCAAAATTATCGAAGCTGCTCTAGTGACAAAATACTTGATTGAACAACCAAAAGCTCGAGGATTTTATCATAGCTACTCCCCTGGACGAGCACAAAAGCTGAAATCACTGAATGATGGATGATTCTCTC

Network for GWHGAAEX018760

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08626.10	TRAPPC9-Trs120	10	186	3.90E-16
PF08626.10	TRAPPC9-Trs120	199	268	3.00E-11
PF08626.10	TRAPPC9-Trs120	319	940	2.10E-33

Protein Sequence

>GWHPAAEX018760
MEPDASMETGSMIRIAVLPIGGPIPHRLLREYVSMLSRHTRIDLSSIDSFYSEHQKSPFTHQPWESGSLRFKYMVGGAPPSPWEDFQAHRKILAVIGLCHCPSSPDLDLVIDQFASVSKGYGSALAKRLFAFSPSNDQLVEGREKENSIILFPPSDQQAHELQMLTMTQDLAATLLMEFEKWVLLAESTGTILKTPLDSQSNLSSEEVIKAKKRRLARAQKTIGDYCLLAGSPADANAHFVTAIELARLTGDVFWHAGALEGSVCALLVDRMDERDSLLEEEVKYRYYTVIQLYKRSYLQDNAQRVSTVTFELEAQLKLAKYLCRQPIAKEVVELLTNASDGAKSLIDASDCLILYVEIARLFAALGYQRKAAFFSRQVAQLYLKQDNTFAAISAMQVLSLTAKAYHVQSRGTNQKLHGLSLDLGSNYAESGKIQPLSIISLFESHWSTLQMVVLREVLMSSVRAGDPLAAWSAAARLLRSFYPLITPAGQSGLASSLTNSADRLPSGTRCADPVLPFIRLHSFPIHPSQVEIIKRYPDKKDWWNDSVPSGPFIYTPFSKGGAIDCNKQELTWVVGEPVQVLVELANPCAFELTVESIYLSIHSGNFDAFPVSVNLPPNTAKVVLLSGIPTKVGHVSIPGCIVHCFGVITEHLFRDVDNLLLGAAQGLVLSDPFRCCGSVKLKNNVVPSILVVPPLPLLVSSVVGGDDATILYEGEVRDIWIRLTNAGTVPIEQTHISLSGKNKNSVISIAREAINSALPLKPGAEVSLTVTIKAWKLSLTDPDQELPKNNSGTMRGVSKEGLNPFLAIHYAGPTSYSDLPQNSSDSSASTPGRRLIVPLHICVAQGLRFVRARLLSMEMPAAVHQPLPGLDVIAAASSGTDSSLGNWELRLLELELSNPTDVAFDVRVSIQPDSSSQANADLRKTRIGRDCSARILIPLEHSKLPPKKGEHYSSAGKPNAAKAELAACISALVSGIKVRWRSGRNSSGELSIKDAVQVALQALVSDVLLPDPLTFRFRLLTTSSSRVDDCKTNRRLGSVLSHEMTDMEVLVRNNTGEPIRASLCLSCRDVAGNNCIEGNNPTVLWAGVVRGVSLEIPPLEEVAHRLALYFVVPGDYTLLAAAVMVDMDAEDPIVCRASPFKINVTVLRSLHLRLLVSLAAQPVEQLANTFNVI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.150
SRP064423	SRR2545915	Juvenile tuber	15.260
SRP108465	SRR5643513	five period of Gastrodia elata	11.880
	SRR5643514	five period of Gastrodia elata	9.130
	SRR5643515	five period of Gastrodia elata	11.540
	SRR5643524	five period of Gastrodia elata	9.440
	SRR5643525	five period of Gastrodia elata	17.030
	SRR5643528	five period of Gastrodia elata	17.810
	SRR5643658	five period of Gastrodia elata	21.480
	SRR5643659	five period of Gastrodia elata	14.490
	SRR5643660	five period of Gastrodia elata	16.940
	SRR5643661	five period of Gastrodia elata	15.480
	SRR5643662	five period of Gastrodia elata	16.300
	SRR5643663	five period of Gastrodia elata	17.030
	SRR5643664	five period of Gastrodia elata	17.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.390
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.210
SRP279888	Gastro	Gastrodia elata tuber	18.89
	Juven	Juvenile tuber	27.92
	Mother_Gastro	Mother tuber of Gastrodia elata	20.11
	Mother_Juven	Mother tuber of Juvenile	31.32