Detail information of GWHGAAEX018767/evm.TU.scaffold_98.38


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|46446319|ref|YP_007684.1|5.00E-166L,L-diaminopimelate aminotransferase [Candidatus Protochlamydia amoebophila UWE25]
KOGKOG02570Kynurenine aminotransferase, glutamine transaminase K
nrgi|672161603|ref|XP_008800625.1|0PREDICTED: probable LL-diaminopimelate aminotransferase, chloroplastic isoform X1 [Phoenix dactylifera]
Swissprottr|Q10MQ2|DAPAT_ORYSJ0Probable LL-diaminopimelate aminotransferase, chloroplastic (Precursor)
trEMBLtr|M0S283|M0S283_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P22750_001}
TAIRAT4G336800Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009421866802215010-
Transcript Sequence

Network for GWHGAAEX018767

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00155.20Aminotran_1_2924522.80E-34
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K10206E2.6.1.83 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Lysine biosynthesismap00300

Gene Ontology

GO term OntologyName
GO:0009058Biological Processbiosynthetic process
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0003824Molecular Functioncatalytic activity
GO:0008483Molecular Functiontransaminase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.170
SRR2545915Juvenile tuber19.960
SRP108465SRR5643513five period of Gastrodia elata22.890
SRR5643514five period of Gastrodia elata21.940
SRR5643515five period of Gastrodia elata19.210
SRR5643524five period of Gastrodia elata20.270
SRR5643525five period of Gastrodia elata20.380
SRR5643528five period of Gastrodia elata19.450
SRR5643658five period of Gastrodia elata21.180
SRR5643659five period of Gastrodia elata20.590
SRR5643660five period of Gastrodia elata22.180
SRR5643661five period of Gastrodia elata19.050
SRR5643662five period of Gastrodia elata25.960
SRR5643663five period of Gastrodia elata23.330
SRR5643664five period of Gastrodia elata23.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.490
SRR6049655Rhizomagastrodiae_C368-T10_good_131.750
SRR6049656Rhizomagastrodiae_C368-T07_good_130.430
SRR6049657Rhizomagastrodiae_C368-T07_good_130.420
SRR6049658Rhizomagastrodiae_C368-T04_good_123.300
SRR6049659Rhizomagastrodiae_C368-T04_good_124.910
SRR6049660Rhizomagastrodiae_C368-T01_good_128.080
SRR6049661Rhizomagastrodiae_C368-T04_good_129.310
SRR6049662Rhizomagastrodiae_C368-T01_good_131.570
SRR6049663Rhizomagastrodiae_C368-T01_good_127.770
SRR6049664Rhizomagastrodiae_C368-T10_good_128.700
SRR6049665Rhizomagastrodiae_C368-T10_good_128.700
SRP279888GastroGastrodia elata tuber 21.67
JuvenJuvenile tuber20.22
Mother_GastroMother tuber of Gastrodia elata 11.30
Mother_JuvenMother tuber of Juvenile 14.75