Detail information of GWHGAAEX018770/evm.TU.scaffold_98.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0765 | 4.00E-126 | Predicted mitochondrial carrier protein |
| nr | gi|694998378|ref|XP_009404267.1| | 2.27E-133 | PREDICTED: solute carrier family 25 member 44-like isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|F4HT41|SAMC2_ARATH | 1.00E-24 | Probable S-adenosylmethionine carrier 2, chloroplastic (Precursor) |
| trEMBL | tr|V4KDN3|V4KDN3_EUTSA | 1.00E-126 | Uncharacterized protein {ECO:0000313|EMBL:ESQ27902.1} |
| TAIR | AT1G72820 | 4.00E-126 | Mitochondrial substrate carrier family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000094 | 2524625 | 2525941 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018770
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00153.26 | Mito_carr | 34 | 106 | 3.20E-12 |
| PF00153.26 | Mito_carr | 124 | 205 | 4.40E-15 |
| PF00153.26 | Mito_carr | 228 | 314 | 3.10E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.740 |
| SRR2545915 | Juvenile tuber | 2.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.690 |
| SRR5643514 | five period of Gastrodia elata | 1.430 | |
| SRR5643515 | five period of Gastrodia elata | 1.610 | |
| SRR5643524 | five period of Gastrodia elata | 1.060 | |
| SRR5643525 | five period of Gastrodia elata | 2.620 | |
| SRR5643528 | five period of Gastrodia elata | 4.520 | |
| SRR5643658 | five period of Gastrodia elata | 1.510 | |
| SRR5643659 | five period of Gastrodia elata | 2.770 | |
| SRR5643660 | five period of Gastrodia elata | 2.960 | |
| SRR5643661 | five period of Gastrodia elata | 5.280 | |
| SRR5643662 | five period of Gastrodia elata | 2.790 | |
| SRR5643663 | five period of Gastrodia elata | 3.010 | |
| SRR5643664 | five period of Gastrodia elata | 2.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.33 |
| Juven | Juvenile tuber | 767.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 108.17 | |
| Mother_Juven | Mother tuber of Juvenile | 257.32 |