Detail information of GWHGAAEX018779/evm.TU.scaffold_98.54


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|584298070|gb|AHI87860.1|5.66E-86MYB5, partial [Dendrobium catenatum]
Swissprottr|O80339|ERF82_ARATH9.00E-33Ethylene-responsive transcription factor 3
trEMBLtr|W6CM95|W6CM95_9ASPA2.00E-86MYB5 {ECO:0000313|EMBL:AHI87860.1} (Fragment)
TAIRAT1G506403.00E-32ethylene responsive element binding factor 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009431574563158010+
Transcript Sequence

Network for GWHGAAEX018779

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.19AP241906.90E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms111.350
SRR2545915Juvenile tuber113.590
SRP108465SRR5643513five period of Gastrodia elata94.130
SRR5643514five period of Gastrodia elata58.380
SRR5643515five period of Gastrodia elata279.970
SRR5643524five period of Gastrodia elata56.880
SRR5643525five period of Gastrodia elata56.790
SRR5643528five period of Gastrodia elata54.860
SRR5643658five period of Gastrodia elata22.480
SRR5643659five period of Gastrodia elata223.350
SRR5643660five period of Gastrodia elata70.660
SRR5643661five period of Gastrodia elata127.090
SRR5643662five period of Gastrodia elata191.550
SRR5643663five period of Gastrodia elata74.680
SRR5643664five period of Gastrodia elata383.920
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1292.350
SRR6049655Rhizomagastrodiae_C368-T10_good_1104.360
SRR6049656Rhizomagastrodiae_C368-T07_good_1191.450
SRR6049657Rhizomagastrodiae_C368-T07_good_1217.550
SRR6049658Rhizomagastrodiae_C368-T04_good_1264.130
SRR6049659Rhizomagastrodiae_C368-T04_good_1381.260
SRR6049660Rhizomagastrodiae_C368-T01_good_1383.960
SRR6049661Rhizomagastrodiae_C368-T04_good_1223.720
SRR6049662Rhizomagastrodiae_C368-T01_good_1162.280
SRR6049663Rhizomagastrodiae_C368-T01_good_1374.220
SRR6049664Rhizomagastrodiae_C368-T10_good_1201.980
SRR6049665Rhizomagastrodiae_C368-T10_good_1201.980
SRP279888GastroGastrodia elata tuber 41.74
JuvenJuvenile tuber49.21
Mother_GastroMother tuber of Gastrodia elata 695.05
Mother_JuvenMother tuber of Juvenile 136.35