Detail information of GWHGAAEX018783/evm.TU.scaffold_98.59


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743890199|ref|XP_010911022.1|7.15E-35PREDICTED: histone H1-like [Elaeis guineensis]
Swissprottr|P26569|H12_ARATH8.00E-28Histone H1.2
trEMBLtr|I1X3K6|I1X3K6_MUSAC3.00E-33Linker histone H1 {ECO:0000313|EMBL:AFI74270.1}
TAIRAT2G306203.00E-27winged-helix DNA-binding transcription factor family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009433148813316161+
Transcript Sequence

Network for GWHGAAEX018783

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00538.18Linker_histone551191.30E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006334Biological Processnucleosome assembly
GO:0003677Molecular FunctionDNA binding
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms71.790
SRR2545915Juvenile tuber83.510
SRP108465SRR5643513five period of Gastrodia elata245.970
SRR5643514five period of Gastrodia elata301.500
SRR5643515five period of Gastrodia elata244.810
SRR5643524five period of Gastrodia elata296.460
SRR5643525five period of Gastrodia elata148.470
SRR5643528five period of Gastrodia elata152.430
SRR5643658five period of Gastrodia elata141.120
SRR5643659five period of Gastrodia elata80.600
SRR5643660five period of Gastrodia elata61.020
SRR5643661five period of Gastrodia elata78.740
SRR5643662five period of Gastrodia elata69.090
SRR5643663five period of Gastrodia elata70.270
SRR5643664five period of Gastrodia elata54.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1258.050
SRR6049655Rhizomagastrodiae_C368-T10_good_1420.970
SRR6049656Rhizomagastrodiae_C368-T07_good_1297.130
SRR6049657Rhizomagastrodiae_C368-T07_good_1252.060
SRR6049658Rhizomagastrodiae_C368-T04_good_1226.110
SRR6049659Rhizomagastrodiae_C368-T04_good_1240.160
SRR6049660Rhizomagastrodiae_C368-T01_good_1277.990
SRR6049661Rhizomagastrodiae_C368-T04_good_1270.750
SRR6049662Rhizomagastrodiae_C368-T01_good_1304.110
SRR6049663Rhizomagastrodiae_C368-T01_good_1245.360
SRR6049664Rhizomagastrodiae_C368-T10_good_1360.650
SRR6049665Rhizomagastrodiae_C368-T10_good_1360.650
SRP279888GastroGastrodia elata tuber 51.47
JuvenJuvenile tuber115.29
Mother_GastroMother tuber of Gastrodia elata 273.03
Mother_JuvenMother tuber of Juvenile 60.29