Detail information of GWHGAAEX018785/evm.TU.scaffold_98.61
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|268316364|ref|YP_003290083.1| | 1.00E-16 | Fis family two component sigma-54 specific transcriptional regulator [Rhodothermus marinus DSM 4252] |
| KOG | KOG1601 | 2.00E-99 | GATA-4/5/6 transcription factors |
| nr | gi|743774335|ref|XP_010917519.1| | 0 | PREDICTED: two-component response regulator ARR1-like [Elaeis guineensis] |
| Swissprot | tr|Q9ZWJ9|ARR2_ARATH | 3.00E-122 | Two-component response regulator ARR2 |
| trEMBL | tr|A0A067KT22|A0A067KT22_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP38123.1} |
| TAIR | AT3G16857 | 2.00E-99 | response regulator 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000094 | 3417523 | 3435291 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018785
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00072.23 | Response_reg | 43 | 151 | 2.00E-22 |
| PF00249.30 | Myb_DNA-binding | 230 | 279 | 4.10E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GARP-ARR-B |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14491 | ARR-B | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.270 |
| SRR2545915 | Juvenile tuber | 31.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.800 |
| SRR5643514 | five period of Gastrodia elata | 23.830 | |
| SRR5643515 | five period of Gastrodia elata | 25.580 | |
| SRR5643524 | five period of Gastrodia elata | 22.500 | |
| SRR5643525 | five period of Gastrodia elata | 19.780 | |
| SRR5643528 | five period of Gastrodia elata | 18.880 | |
| SRR5643658 | five period of Gastrodia elata | 23.710 | |
| SRR5643659 | five period of Gastrodia elata | 27.820 | |
| SRR5643660 | five period of Gastrodia elata | 31.350 | |
| SRR5643661 | five period of Gastrodia elata | 26.540 | |
| SRR5643662 | five period of Gastrodia elata | 30.180 | |
| SRR5643663 | five period of Gastrodia elata | 26.890 | |
| SRR5643664 | five period of Gastrodia elata | 28.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.14 |
| Juven | Juvenile tuber | 43.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.99 | |
| Mother_Juven | Mother tuber of Juvenile | 29.25 |