Detail information of GWHGAAEX018786/evm.TU.scaffold_98.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 5.00E-157 | FOG: PPR repeat |
| nr | gi|695038286|ref|XP_009406650.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O04491|PPR26_ARATH | 2.00E-157 | Putative pentatricopeptide repeat-containing protein At1g09680 |
| trEMBL | tr|M0TBK9|M0TBK9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P30640_001} |
| TAIR | AT1G09680 | 5.00E-157 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000094 | 3497295 | 3508987 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018786
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 211 | 238 | 0.018 |
| PF13041.5 | PPR_2 | 241 | 288 | 6.10E-14 |
| PF01535.19 | PPR | 313 | 343 | 4.60E-07 |
| PF13041.5 | PPR_2 | 346 | 394 | 4.80E-14 |
| PF01535.19 | PPR | 418 | 448 | 0.00061 |
| PF13041.5 | PPR_2 | 450 | 499 | 8.20E-17 |
| PF12854.6 | PPR_1 | 517 | 540 | 1.50E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.030 |
| SRR2545915 | Juvenile tuber | 3.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.210 |
| SRR5643514 | five period of Gastrodia elata | 2.430 | |
| SRR5643515 | five period of Gastrodia elata | 2.520 | |
| SRR5643524 | five period of Gastrodia elata | 2.300 | |
| SRR5643525 | five period of Gastrodia elata | 0.750 | |
| SRR5643528 | five period of Gastrodia elata | 0.500 | |
| SRR5643658 | five period of Gastrodia elata | 0.400 | |
| SRR5643659 | five period of Gastrodia elata | 2.910 | |
| SRR5643660 | five period of Gastrodia elata | 3.390 | |
| SRR5643661 | five period of Gastrodia elata | 3.140 | |
| SRR5643662 | five period of Gastrodia elata | 2.550 | |
| SRR5643663 | five period of Gastrodia elata | 2.220 | |
| SRR5643664 | five period of Gastrodia elata | 2.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.28 |
| Juven | Juvenile tuber | 6.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.47 | |
| Mother_Juven | Mother tuber of Juvenile | 1.97 |