Detail information of GWHGAAEX018788/evm.TU.scaffold_98.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|470180041|ref|YP_007566085.1| | 2.00E-107 | glutamine synthetase II [Ilumatobacter coccineus YM16-304] |
| KOG | KOG0683 | 0 | Glutamine synthetase |
| nr | gi|695076493|ref|XP_009385541.1| | 0 | PREDICTED: glutamine synthetase nodule isozyme-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P32289|GLNA_VIGAC | 0 | Glutamine synthetase nodule isozyme |
| trEMBL | tr|M0U5F8|M0U5F8_MUSAM | 0 | Glutamine synthetase {ECO:0000256|RuleBase:RU004356} |
| TAIR | AT5G37600 | 0 | glutamine synthase clone R1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000094 | 3546494 | 3550210 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018788
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03951.18 | Gln-synt_N | 32 | 97 | 6.80E-11 |
| PF00120.23 | Gln-synt_C | 151 | 351 | 2.70E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006807 | Biological Process | nitrogen compound metabolic process |
| GO:0006542 | Biological Process | glutamine biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004356 | Molecular Function | glutamate-ammonia ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.810 |
| SRR2545915 | Juvenile tuber | 9.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.790 |
| SRR5643514 | five period of Gastrodia elata | 26.400 | |
| SRR5643515 | five period of Gastrodia elata | 33.670 | |
| SRR5643524 | five period of Gastrodia elata | 40.650 | |
| SRR5643525 | five period of Gastrodia elata | 18.640 | |
| SRR5643528 | five period of Gastrodia elata | 31.720 | |
| SRR5643658 | five period of Gastrodia elata | 16.730 | |
| SRR5643659 | five period of Gastrodia elata | 12.970 | |
| SRR5643660 | five period of Gastrodia elata | 11.900 | |
| SRR5643661 | five period of Gastrodia elata | 12.670 | |
| SRR5643662 | five period of Gastrodia elata | 19.960 | |
| SRR5643663 | five period of Gastrodia elata | 16.000 | |
| SRR5643664 | five period of Gastrodia elata | 13.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 48.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 40.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 64.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 61.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 61.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.36 |
| Juven | Juvenile tuber | 3.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.37 | |
| Mother_Juven | Mother tuber of Juvenile | 10.47 |