Detail information of GWHGAAEX018794/evm.TU.scaffold_98.74
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428308622|ref|YP_007119599.1| | 7.00E-80 | signal transduction histidine kinase [Microcoleus sp. PCC 7113] |
| KOG | KOG0519 | 0 | Sensory transduction histidine kinase |
| nr | gi|743871507|ref|XP_010906323.1| | 0 | PREDICTED: histidine kinase 4-like [Elaeis guineensis] |
| Swissprot | tr|Q9C5U0|AHK4_ARATH | 0 | Histidine kinase 4 |
| trEMBL | tr|K4A5G4|K4A5G4_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si034118m} |
| TAIR | AT1G27320 | 0 | histidine kinase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000094 | 3867109 | 3884333 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018794
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03924.12 | CHASE | 89 | 269 | 5.10E-34 |
| PF00512.24 | HisKA | 359 | 424 | 2.30E-17 |
| PF02518.25 | HATPase_c | 471 | 656 | 2.60E-32 |
| PF00072.23 | Response_reg | 833 | 901 | 3.50E-15 |
| PF00072.23 | Response_reg | 930 | 970 | 1.70E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Others |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14489 | AHK2_3_4 | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007165 | Biological Process | signal transduction |
| GO:0016310 | Biological Process | phosphorylation |
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0016772 | Molecular Function | transferase activity, transferring phosphorus-containing groups |
| GO:0000155 | Molecular Function | phosphorelay sensor kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.210 |
| SRR2545915 | Juvenile tuber | 10.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.730 |
| SRR5643514 | five period of Gastrodia elata | 20.230 | |
| SRR5643515 | five period of Gastrodia elata | 11.330 | |
| SRR5643524 | five period of Gastrodia elata | 15.820 | |
| SRR5643525 | five period of Gastrodia elata | 27.280 | |
| SRR5643528 | five period of Gastrodia elata | 23.590 | |
| SRR5643658 | five period of Gastrodia elata | 23.890 | |
| SRR5643659 | five period of Gastrodia elata | 17.550 | |
| SRR5643660 | five period of Gastrodia elata | 19.920 | |
| SRR5643661 | five period of Gastrodia elata | 16.340 | |
| SRR5643662 | five period of Gastrodia elata | 22.300 | |
| SRR5643663 | five period of Gastrodia elata | 30.270 | |
| SRR5643664 | five period of Gastrodia elata | 23.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.43 |
| Juven | Juvenile tuber | 22.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.70 | |
| Mother_Juven | Mother tuber of Juvenile | 8.51 |