Gene detail

Detail information of GWHGAAEX018795/evm.TU.scaffold_99.2

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|294496457\|ref\|YP_003542950.1\|	1.00E-79	condensin subunit Smc [Methanohalophilus mahii DSM 5219]
KOG	KOG0964	0	Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3)
nr	gi\|672113136\|ref\|XP_008809384.1\|	0	PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q56YN8\|SMC3_ARATH	0	Structural maintenance of chromosomes protein 3
trEMBL	tr\|M0S7X5\|M0S7X5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P14340_001}
TAIR	AT2G27170	0	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	33816	132710	+

Transcript Sequence
>GWHTAAEX018795 ACTGTTTTTATTTTTAAAATCTATAATAAATATATATTATTTTCTATTTACAATGAACTAAGCTCGAAGTTACCCTTCCTTTCTGAAGTTACTCTTCGTTTCCGATCGGATCGGTGAAGTAAACGCGACTCTCTTCCAGATCGGCGGGGCGCGTCCATAGTTCGGAGAAGGCGACGAAGGCGCAGCGCCTCTCCTCTCCGCAATCAGCGTCTGGCGCAACTGTCCGAGGGAATGGAGTAAACGACGTTTATTAGGTATTGGATGGTGATTCAGGGTCTAGGGTTTACTGTTGACAATGTATATTAAGAAGATTGTTATTGAAGGTTTTAAGAGTTATAAGGAGGAGGTGTCCACTGATCCATTCAGCCCCAAAATCAATTGTGTTGTTGGTGCCAATGGATCGGGAAAAACCAACTTTTTTCATGCTATACGCTTTGTTCTCAGTGATCTTTTCCAAAACTTGCGCAGTGAAGACAGACAAGCACTTCTTCATGAAGGTGCTGGTCACCAAGTTATATCTGCCTTCGTGGAGATAGTATTTGATAATTCTGACAATCGTATTCCTGTTGATAAGGAAGAGGTTCGATTGCGCAGGACAATTGGTGTAAAAAAGGATGAATATTTTTTGGATGCAAAGCATGTCACTAAAACTGAAGTGATGAATTTGCTAGAAAGTGCTGGTTTTTCTCGGTCTAATCCTTATTATGTTGTTCAGCAAGGGAAGATTGCTTCTCTCACATTAATGAAAGATTCTGAGCGCTTAGATTTACTGAAGGAAATTGGTGGAACACGTGTTTATGAGGAAAGAAGGCGTGAGAGTTTGAAAATTATGCAAGAAACAGGAAATAAACGAAAACAGATTGAACAAGTTGTTCAGTATCTCGAGGAGAGATTGAGAGATCTAGATGAAGAAAAAGAAGAACTTAAAAAGTACCAACAGCTTGACAAGAAGATCAGATCACTTGAATACATCATTTTGGAAAAAGACATGGATGATGCTGCTCAGAAATTGAGGGAGATAGAGGATGCAAGGAATGCTGTTTCAGAAAAGTCAACTAACATGCATAATAAAATTTTAAAGAACCATGACAGGTTGAAAGAGTTAGAGAAAGATTTCAAAACATTTTCTAAAGCTATTCAAGGTCTCACTCGAGATAAAGAGGTGATAGAGAAAAAACGCACTGAGGCATTAAAGAATCATACTCAGGTTGAACTTGATTTAAAGGACATTGAAGAGAGAATTTCTGGGAATAATCGTGCAAAGGACGATGCTGCAAGACAACTAAAGGGCCTGAAGAAAGAAATTGAAGATTCTAGAAATGAACTCAATGCAATTAGGCCATTGCACAATGACAAAGTTGCTGAAGAGGAAAGCTTCAATAAAGCCATTATGGAATGTGAGAAACAGCTTAGTATATTATACCAAAAGCAAGGGCGTGCTACTCAATTTGCAAGTAAAGCTGCTCGAGATAAGTGGCTCCAAAGGGAAATTGATGATCTGCAGCGTCCTCTCTCATCGCATTTAGGGCAGGAGAAGAAACTTCAAGAAGAAATTCAACAACTTAAAGATGAGGAAAAGAAGCTGGATTTTTATATCGAGGAACAAAGAGCTGAATCAAAAAGACTTGAATTTGGCATCTCAAAGATTCAAGAGGAATTTAATAGATTGAAAGTACAAAGAGATGAACTACAAGATAAACGAAAGTCATTATGGAAGACAGAAGGAGAACTTTCTGCTGAAATTGATAAGCTTAGATCAGATCTTGTGAAAGCCAAGAAGAGTTTGGACCATGCTACTCCTGGTGATACTAGAAGGGGACTAAATTCAGTGGACAGATATGTCAATGATCACAACATTGAAGGCGTTTATGGCTCACTCTTAGAGTTAATTGAATGCGATGAGAAATTCTTTACTGCTGTTGAAGTTACTGCTGGAAATAGTCTATTCCATGTCGTGGTTGCAACAGATGAGATTTCTTCCAGGATTATTAGATATCTTATTTCAGAGAAAGGTGGGAGAGTTACATTCATACCCTTGAACAGGGTTAATACACATCGGATAAACTATCCTCAAAGTTCAGATGTGGTGCCTTTGTTAAAAAAATTAAAATTTCGTTCTGACTGTTCGCCAGCTTTTCAACAAGTATTCTCCAGAACAGTAATCTGCCGTGACTTGGATGTTGCTACAAATGTTGCTCGAGCTAATGGTCTTGACTGTATTACACTTGAAGGTGATCAAGTCAGCAAGAAAGGTGGTATGACAGGAGGATTTTATGATTCTAGACGGTCAAAACTCAAGTTTATGAATATTATTAAGCAAAGTAACAATTCTATTCTCAAGAAAATAGATGAGCAAGATAAGATTTCTAAAGAGCTTCAAGATGTAGATAAGGAAATTAACGATTTAGTTAGTAGACAGCAGAGAATAGATGCCGAACGTGGTCATATGAAGTCAGAGTTAGAGCAACTTAAATTGGACATAACTAATGCTGTTAAGCAGAGGCAATCAATTTTTAGAGTACTTGAGAAAAAGGGAAAACTGCTTGAGAATGCTCACACCCAGATTGATCAAATTAGAGCGGGAATTGCAATGAAACGAGCTGAAATGGGCACAGATCTTGTTGACCAGCTAACTCCAAAAGAAAAGGAACTCCTTTCACGGTTAAATCCAGAAATAACTGAACTAAAAGAGAAACTTTTATCTTGTACAACAAGTAGAATTGAAATTGAAACAAGGAAAGAGGAGTTGGAGACTAATCTATCCACAAACCTTGTTAGACGACAACAAGAGTTGGAGGCAATAATTTCGTCTGCAGATTCTAGCATTTTTCCTTTGGAAGCTATGCATAAGCGCCAGGAATTAGAGGAATCTAAACAAACTGTTTCAGAATTAACAAAGCAGCTTAATCAGATATTGCAGAATATTGAAGAGCATAATAAGAAGATTAAAAGTAACAGAAATGAGAAGGATCGTATTAAGGCTACTGAAGAAGAATTTGAGCGTACACTTCAAGATGAAGCAAAAGATCTGGATCAATTACTTAATAAGAGAAATTTACTTATGTCTAAGCAGGATGATTGCAAGAAAAAAATACGGGATTTGGGTTCCTTGCCTTCTGATGCTTTTGAGAGATATAAGAAGAAAAACATGAAAGAGTTGGTAAAATTGCTTCATAAGTGCAATGAGGAGCTAAAGCAGTTTAGCCATGTTAATAAAAAGGCGCTTGATCAATACATGAATTTCACTGAACAGCGGGAACAGCTTCAGAAAAGAAGAGCTGAGCTTGATGCTGGTGATCAGAAAATTCGTGAGCTTATTTCTGTTCTGGATCAACGGAAGGATGAATCCATTGAACGAACTTTTAAAGGAGTTGCTAGAAATTTTCGTGAAGTATTTTCAGAGCTTGTACAAGGTGGACATGGGTATTTGGTAATGATGAAAAAGAAGGAAGGTGAGCCCATTGATTATGAAAATGATGAGGATGGGCCTCATCGCACGGATCCTGAGGGAAGAGTGGAGAAATACATTGGTGTAAAAGTAAAGGTATCATTTACCGGTCAAGGTGAAACTCAGTCAATGAAACAACTTTCCGGTGGTCAGAAAACAGTGGTGGCATTAACACTTATATTTGCCATACAGCGTTGCGATCCCGCCCCATTCTATCTATTTGATGAGATTGACGCTGCATTGGATCCACAGTACAGGACTGCTGTTGGCAATATGATTCATCGTTTGGCCGACGTGGCAAATACTCAATTCATCACGACAACATTCAGGCCGGAGCTCGTGAAAGTCGCAGATAAGATATATGGTGTTACTCACAGGAACAGAGTCAGCCATGTCAATGTAGTGACGAAGGAGGAGGCTCTTAATTTTATCGAACATGATCAGACCCACAGCGCCTAATCCGGTGATTTCTTTCACGTACACACTTCATTCCATTTAAATAGCGGCTAATAGCCATCCGGTCCAGCTGTTCAAATTGATCAAGCGACCTACCAACCAAACAAACCAGGTCAATTTGGACCTTCAATGACCGGTTCTCAATTAGGTGTGCTCAACTTGGCGGTGTAGTTTTGTTTTATTTTCTTAGTATGGGAATGTTTATGGATTTGTTGAATATTTGAATCTTTATACAAATATAAAACTAGCTGATGTTGTGATTATGTGCACCTATAATGTTGCTGTTAATGCAAAATTGATATTACTATTTTTATTTCTCAGCCATGTCTTTTTAATCATTAATTTGATTGAGATTCCATGCTCAAATTGTTATTCAAAATATAGATCGGCGTTAA

Network for GWHGAAEX018795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.18	SMC_N	2	1180	2.10E-67
PF06470.12	SMC_hinge	522	634	5.60E-27

Protein Sequence

>GWHPAAEX018795
MYIKKIVIEGFKSYKEEVSTDPFSPKINCVVGANGSGKTNFFHAIRFVLSDLFQNLRSEDRQALLHEGAGHQVISAFVEIVFDNSDNRIPVDKEEVRLRRTIGVKKDEYFLDAKHVTKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIEQVVQYLEERLRDLDEEKEELKKYQQLDKKIRSLEYIILEKDMDDAAQKLREIEDARNAVSEKSTNMHNKILKNHDRLKELEKDFKTFSKAIQGLTRDKEVIEKKRTEALKNHTQVELDLKDIEERISGNNRAKDDAARQLKGLKKEIEDSRNELNAIRPLHNDKVAEEESFNKAIMECEKQLSILYQKQGRATQFASKAARDKWLQREIDDLQRPLSSHLGQEKKLQEEIQQLKDEEKKLDFYIEEQRAESKRLEFGISKIQEEFNRLKVQRDELQDKRKSLWKTEGELSAEIDKLRSDLVKAKKSLDHATPGDTRRGLNSVDRYVNDHNIEGVYGSLLELIECDEKFFTAVEVTAGNSLFHVVVATDEISSRIIRYLISEKGGRVTFIPLNRVNTHRINYPQSSDVVPLLKKLKFRSDCSPAFQQVFSRTVICRDLDVATNVARANGLDCITLEGDQVSKKGGMTGGFYDSRRSKLKFMNIIKQSNNSILKKIDEQDKISKELQDVDKEINDLVSRQQRIDAERGHMKSELEQLKLDITNAVKQRQSIFRVLEKKGKLLENAHTQIDQIRAGIAMKRAEMGTDLVDQLTPKEKELLSRLNPEITELKEKLLSCTTSRIEIETRKEELETNLSTNLVRRQQELEAIISSADSSIFPLEAMHKRQELEESKQTVSELTKQLNQILQNIEEHNKKIKSNRNEKDRIKATEEEFERTLQDEAKDLDQLLNKRNLLMSKQDDCKKKIRDLGSLPSDAFERYKKKNMKELVKLLHKCNEELKQFSHVNKKALDQYMNFTEQREQLQKRRAELDAGDQKIRELISVLDQRKDESIERTFKGVARNFREVFSELVQGGHGYLVMMKKKEGEPIDYENDEDGPHRTDPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIHRLADVANTQFITTTFRPELVKVADKIYGVTHRNRVSHVNVVTKEEALNFIEHDQTHSA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06669	SMC3, CSPG6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0051276	Biological Process	chromosome organization
GO:0005524	Molecular Function	ATP binding
GO:0005515	Molecular Function	protein binding
GO:0005694	Cellular Component	chromosome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	234.760
SRP064423	SRR2545915	Juvenile tuber	165.130
SRP108465	SRR5643513	five period of Gastrodia elata	73.660
	SRR5643514	five period of Gastrodia elata	77.910
	SRR5643515	five period of Gastrodia elata	71.530
	SRR5643524	five period of Gastrodia elata	75.880
	SRR5643525	five period of Gastrodia elata	65.450
	SRR5643528	five period of Gastrodia elata	60.830
	SRR5643658	five period of Gastrodia elata	70.430
	SRR5643659	five period of Gastrodia elata	76.350
	SRR5643660	five period of Gastrodia elata	81.510
	SRR5643661	five period of Gastrodia elata	71.330
	SRR5643662	five period of Gastrodia elata	75.410
	SRR5643663	five period of Gastrodia elata	76.990
	SRR5643664	five period of Gastrodia elata	79.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	87.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	77.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	122.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	119.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	153.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	110.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	107.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	76.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	96.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	71.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	71.090
SRP279888	Gastro	Gastrodia elata tuber	86.87
	Juven	Juvenile tuber	112.23
	Mother_Gastro	Mother tuber of Gastrodia elata	71.49
	Mother_Juven	Mother tuber of Juvenile	93.94