Detail information of GWHGAAEX018797/evm.TU.scaffold_99.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2479 | 0 | Translation initiation factor 3, subunit d (eIF-3d) |
| nr | gi|672157255|ref|XP_008798328.1| | 0 | PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Phoenix dactylifera] |
| Swissprot | tr|P56820|EIF3D_ARATH | 0 | Eukaryotic translation initiation factor 3 subunit D {ECO:0000255|HAMAP-Rule:MF_03003} |
| trEMBL | tr|Q1EPJ8|Q1EPJ8_MUSAC | 0 | Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003} |
| TAIR | AT4G20980 | 0 | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 205046 | 207336 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018797
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05091.11 | eIF-3_zeta | 50 | 574 | 7.80E-194 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03251 | EIF3D | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003743 | Molecular Function | translation initiation factor activity |
| GO:0005852 | Cellular Component | eukaryotic translation initiation factor 3 complex |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 140.260 |
| SRR2545915 | Juvenile tuber | 187.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 101.270 |
| SRR5643514 | five period of Gastrodia elata | 100.510 | |
| SRR5643515 | five period of Gastrodia elata | 93.620 | |
| SRR5643524 | five period of Gastrodia elata | 99.110 | |
| SRR5643525 | five period of Gastrodia elata | 70.310 | |
| SRR5643528 | five period of Gastrodia elata | 61.350 | |
| SRR5643658 | five period of Gastrodia elata | 67.890 | |
| SRR5643659 | five period of Gastrodia elata | 162.910 | |
| SRR5643660 | five period of Gastrodia elata | 169.250 | |
| SRR5643661 | five period of Gastrodia elata | 170.230 | |
| SRR5643662 | five period of Gastrodia elata | 187.630 | |
| SRR5643663 | five period of Gastrodia elata | 173.600 | |
| SRR5643664 | five period of Gastrodia elata | 192.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 195.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 165.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 189.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 216.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 240.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 278.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 234.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 245.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 158.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 213.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 127.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 127.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 130.69 |
| Juven | Juvenile tuber | 159.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.89 | |
| Mother_Juven | Mother tuber of Juvenile | 90.97 |