Gene detail

Detail information of GWHGAAEX018800/evm.TU.scaffold_99.7

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2065	Gamma-tubulin ring complex protein
nr	gi\|743819951\|ref\|XP_010931663.1\|	PREDICTED: gamma-tubulin complex component 4 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9M350\|GACP4_ARATH	Gamma-tubulin complex component 4
trEMBL	tr\|M0U509\|M0U509_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P31020_001}
TAIR	AT3G53760	GAMMA-TUBULIN COMPLEX PROTEIN 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	246845	301719	-

Transcript Sequence
>GWHTAAEX018800 GTCCGCATTTCTGACCCAAAACGTTGGCCTTTCACTGGCCAATCGATGAACTGCAGTCCCCGCCGTCGGGCTGAATACCGGCAAGCCAAGAGAGAATTGAACGGGAAGAAATGCTGCACGAGTTGTTGCTTGCCCTCGTTGGCTACACAGGAGATTTGGTGATTGATGAAAGGGAACAGCCTGAAACCCTACGCGACTCCTCCGACCCTCTTTCAGACTTTCCGATCGAGTCCACCTTCAAGATAGCGCCGGATATCTCTTTTCTGCAGCCATCCGAGAGGGATGTTATTGGAAGGCTTTTACCATTGGGCTTCTACTATAGGGGTCTTGAATATTTTGCTGCTAAACATCGGCATTTGCGTTCTTTTCAGCTTTCAAAGCATTGTCAACAGGCCCAAGCACAAAAATTACAAAAAGAAAGCTCAGGGAAAGAAAGTCTTTACCACAGGGCCATTGCCAATGGGATAGCTGAGATTTTGTCACTTTATAGATCCGCTGTTTTACAAATTGAGCAGAATTTGTTATCGGATCCTATGCCTATTTTGGCAACTGTGACTGGTGGCCTCACTAAGTTTGATGTGCTTCTGCCACCAGTCTACGAGCTTATAGCAGAGATTGAAAAAGAAGGTATCAGAGGAGGGCAACTTCTAAACCTTTTACATAAAAGATGCCATTGCGGAGTTCCTGAACTGCAAGTGTGCATCCAAAGGCTCCTTTGGCACGGACATCAAGTCTTGTATGACCAACTAGCAGCTTGGATGGTTTACGGTATTCTTCAAGATCCATTTGAGGAGTTTTTCATTCGAAGGCAAGATACTAAGGATAATGAAAGTGAATCGTCTCTTTCAGATACCACTGTCAAGTTGATGCAAAAATCATCTGAAAATGCAGCGCTCACTGATTGGAACATAGGATTTCATGTATTTCTGGAAATGTTACCGGATTACATAGATATGCAGATTGCTGAGTTAATTCTTTTTGCTGGTAAAGCAGTGAGAGTTCTTCAAAATCCAACATATTCATTCAGAGTGCTAGACTCCTTCTTTCAACAACACATTCAAAGAGGACCTCATAAGATCCAGGGATTAGTGGGAAACTTTGCCTCTCCTTCGGATCACCTGAACAGTATGAATAGAAATTCTGAACTCTTCCCACAAATTGAGGCTGATAAAATTGAAGAAATGCTTCAAGAGTTGAAGCAATCATCGGAGTTCCATAAAAGATCGTTTGAATCTGCCATAAATTCAATAAGGACTATTACAGCAAATCATCTTTGGCAGCTTGTAGTTGTTCGTGCTGATTTGAATGGTCACTTGAATGCCCTCAAAGATTATTTTCTTTTATCTAAAGGCGATTTCTTCCAGTGTTTCCTTGAAGGTAGCCGTCAATTGATGCGTCTACCTCCTCGACAATCAACTGCTGAAGCTGATCTTATGGTTCCTTTTCAATTGGCTGCGTTGAAGACTATAAGTGAAGAAGACAAGTACTTTTCTAGGGTATTGTTGAGACTACCTTCACTTGGAATTTGCCCGACAAGCTCTGAAATAAATTTACCAAAAAAAATTGGTGTTGGACTCGGAGTTTCTTTGCATGGCAAAAGTTCGGAGTTGTCAGTGGATGGTTGGGATGGAATTGCACTAGATTATTCTGTTGATTGGCCATTACAACTGTTCTTTACTCCAGAAGTCCTATCTAAGTACCGTAAAATTTTTCAGTATTTGATCAAACTTAAGCGAACACAGATGGAACTGGAAAAATCTTGGGCTGATGCAATGCATCAAGACCATGTTGACTTTTCCAACCATAAAAGGCAGAGAAAGAATTCCTCTCTATCTCATCAGTTTCGATTACGTGCCAGGCCAATGTGGCAAGTTAGAGAGCATATGATTTTTTTGATCAGAAACCTTCAGTTTTACATCCAGGTTGATGTCATTGAGTCTCAGTGGAGCTTGTTGCAAGCTCATGTACAGACTTCCAATGATTTCACTGAACTTGTGAGCTTCCATCAAGGGTATTTATCAGCTTTGATTTCGCAGTCTTTTCTGGATATTGGGTCTGTGTCGAGGATTTTCGACAGCATTATGAAACTTTGCTTACAGTTCTGCTGGAACATAGAGCAGCATGAAACTAATCCGAACCCATCTGAGTTGGAGCAAATAACTGAGGAATTTAATAAGAAGTCAAATTCACTGTACACTATACTCCGCAGCAGCCGGCTTGCCGGGAGTCAGAGAGCCCCTTTTCTTAGGCAGTTCCTCGTGCGTCTGAACTACAATTCCTTCTTTGAGGCTACAGCAAGGGGCGTGCTGAATGTTGTTAGGCCGCGTCCAAATGTTGCTCCTCTCCAGCAAACCCAGGGTTAGAAAGCTTATTTTCAGGTTGTAATTGTATTTTCTTTCAAAAAAAGATGTTATGAATGAAAATATCTTTACTGAATGAAGAGCACACGTTAAGTTTGTTTTTCCGATTAAATTATTATGTTTAGGACTTAGGATTTATTAGAGCGGATATTATTAAACTAATGAGAAATGCTACGGGTTCCAAGGCAGAGGCCAAACCAAACCGCTTCTTAGATATTGTTCAGATTTTTCTAATTTCACATATAAAAATGCATCACACCTGCTTAATTTTTTTTCTGTGGGTATTACAGTT

Network for GWHGAAEX018800

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04130.12	Spc97_Spc98	4	644	4.10E-110

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043015	Molecular Function	gamma-tubulin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.080
SRP064423	SRR2545915	Juvenile tuber	50.080
SRP108465	SRR5643513	five period of Gastrodia elata	18.900
	SRR5643514	five period of Gastrodia elata	17.420
	SRR5643515	five period of Gastrodia elata	15.940
	SRR5643524	five period of Gastrodia elata	15.910
	SRR5643525	five period of Gastrodia elata	13.530
	SRR5643528	five period of Gastrodia elata	11.730
	SRR5643658	five period of Gastrodia elata	16.940
	SRR5643659	five period of Gastrodia elata	17.120
	SRR5643660	five period of Gastrodia elata	19.300
	SRR5643661	five period of Gastrodia elata	18.420
	SRR5643662	five period of Gastrodia elata	21.260
	SRR5643663	five period of Gastrodia elata	21.520
	SRR5643664	five period of Gastrodia elata	22.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.980
SRP279888	Gastro	Gastrodia elata tuber	22.65
	Juven	Juvenile tuber	24.14
	Mother_Gastro	Mother tuber of Gastrodia elata	13.49
	Mother_Juven	Mother tuber of Juvenile	15.71