Detail information of GWHGAAEX018802/evm.TU.scaffold_99.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4112 | 7.00E-14 | Signal peptidase subunit |
| nr | gi|747079158|ref|XP_011086767.1| | 2.39E-47 | PREDICTED: probable signal peptidase complex subunit 1 [Sesamum indicum] |
| Swissprot | tr|Q944J0|SPCS1_ARATH | 2.00E-35 | Probable signal peptidase complex subunit 1 |
| trEMBL | tr|A0A022QF79|A0A022QF79_ERYGU | 5.00E-44 | Uncharacterized protein {ECO:0000313|EMBL:EYU25913.1} |
| TAIR | HS7661746 | 7.00E-14 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 355930 | 375083 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018802
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06645.12 | SPC12 | 17 | 86 | 1.50E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12946 | SPCS1 | Protein export | map03060 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006465 | Biological Process | signal peptide processing |
| GO:0008233 | Molecular Function | peptidase activity |
| GO:0005787 | Cellular Component | signal peptidase complex |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.560 |
| SRR2545915 | Juvenile tuber | 0.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.150 | |
| SRR5643515 | five period of Gastrodia elata | 0.280 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.380 | |
| SRR5643659 | five period of Gastrodia elata | 0.410 | |
| SRR5643660 | five period of Gastrodia elata | 0.270 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.180 | |
| SRR5643663 | five period of Gastrodia elata | 0.410 | |
| SRR5643664 | five period of Gastrodia elata | 0.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.86 |
| Juven | Juvenile tuber | 0.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.29 | |
| Mother_Juven | Mother tuber of Juvenile | 0.24 |