Detail information of GWHGAAEX018803/evm.TU.scaffold_99.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1171 | 4.00E-80 | Metallothionein-like protein |
| nr | gi|719980046|ref|XP_010249672.1| | 2.06E-87 | PREDICTED: protein tesmin/TSO1-like CXC 5 [Nelumbo nucifera] |
| Swissprot | tr|Q9SZD1|TCX5_ARATH | 1.00E-80 | Protein tesmin/TSO1-like CXC 5 |
| trEMBL | tr|W9RQG8|W9RQG8_9ROSA | 2.00E-87 | Uncharacterized protein {ECO:0000313|EMBL:EXC03774.1} |
| TAIR | AT4G29000 | 4.00E-80 | Tesmin/TSO1-like CXC domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 375253 | 383013 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018803
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06645.12 | SPC12 | 1 | 70 | 1.70E-27 |
| PF03638.14 | TCR | 118 | 152 | 5.80E-10 |
| PF03638.14 | TCR | 203 | 238 | 4.40E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CPP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006465 | Biological Process | signal peptide processing |
| GO:0008233 | Molecular Function | peptidase activity |
| GO:0005787 | Cellular Component | signal peptidase complex |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.320 |
| SRR2545915 | Juvenile tuber | 9.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.900 |
| SRR5643514 | five period of Gastrodia elata | 7.750 | |
| SRR5643515 | five period of Gastrodia elata | 4.690 | |
| SRR5643524 | five period of Gastrodia elata | 8.020 | |
| SRR5643525 | five period of Gastrodia elata | 6.560 | |
| SRR5643528 | five period of Gastrodia elata | 7.810 | |
| SRR5643658 | five period of Gastrodia elata | 4.220 | |
| SRR5643659 | five period of Gastrodia elata | 4.760 | |
| SRR5643660 | five period of Gastrodia elata | 6.230 | |
| SRR5643661 | five period of Gastrodia elata | 7.200 | |
| SRR5643662 | five period of Gastrodia elata | 5.650 | |
| SRR5643663 | five period of Gastrodia elata | 9.140 | |
| SRR5643664 | five period of Gastrodia elata | 6.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.75 |
| Juven | Juvenile tuber | 9.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.62 | |
| Mother_Juven | Mother tuber of Juvenile | 12.64 |