Detail information of GWHGAAEX018811/evm.TU.scaffold_99.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG22491.00E-823'-5' exonuclease
nrgi|672157017|ref|XP_008798200.1|5.39E-115PREDICTED: RNA exonuclease 4 [Phoenix dactylifera]
Swissprottr|Q8RXK2|SDN3_ARATH4.00E-17Small RNA degrading nuclease 3
trEMBLtr|M0S6E7|M0S6E7_MUSAM2.00E-110Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P09060_001}
TAIRAT3G150801.00E-82Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000098456328470671-
Transcript Sequence

Network for GWHGAAEX018811

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00929.23RNase_T862333.30E-16
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006364Biological ProcessrRNA processing
GO:0008408Molecular Function3'-5' exonuclease activity
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.070
SRR2545915Juvenile tuber26.130
SRP108465SRR5643513five period of Gastrodia elata24.110
SRR5643514five period of Gastrodia elata22.540
SRR5643515five period of Gastrodia elata19.800
SRR5643524five period of Gastrodia elata20.610
SRR5643525five period of Gastrodia elata24.820
SRR5643528five period of Gastrodia elata20.510
SRR5643658five period of Gastrodia elata19.400
SRR5643659five period of Gastrodia elata26.090
SRR5643660five period of Gastrodia elata30.600
SRR5643661five period of Gastrodia elata27.280
SRR5643662five period of Gastrodia elata25.220
SRR5643663five period of Gastrodia elata27.560
SRR5643664five period of Gastrodia elata24.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.690
SRR6049655Rhizomagastrodiae_C368-T10_good_134.570
SRR6049656Rhizomagastrodiae_C368-T07_good_132.240
SRR6049657Rhizomagastrodiae_C368-T07_good_129.820
SRR6049658Rhizomagastrodiae_C368-T04_good_139.500
SRR6049659Rhizomagastrodiae_C368-T04_good_136.150
SRR6049660Rhizomagastrodiae_C368-T01_good_133.950
SRR6049661Rhizomagastrodiae_C368-T04_good_136.210
SRR6049662Rhizomagastrodiae_C368-T01_good_140.670
SRR6049663Rhizomagastrodiae_C368-T01_good_139.730
SRR6049664Rhizomagastrodiae_C368-T10_good_130.140
SRR6049665Rhizomagastrodiae_C368-T10_good_130.140
SRP279888GastroGastrodia elata tuber 42.84
JuvenJuvenile tuber32.92
Mother_GastroMother tuber of Gastrodia elata 29.06
Mother_JuvenMother tuber of Juvenile 25.98