Detail information of GWHGAAEX018815/evm.TU.scaffold_99.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428778348|ref|YP_007170135.1|2.00E-849-cis-epoxycarotenoid dioxygenase [Halothece sp. PCC 7418]
KOGKOG12852.00E-60Beta, beta-carotene 15,15'-dioxygenase and related enzymes
nrgi|147765318|emb|CAN66950.1|0hypothetical protein VITISV_020097 [Vitis vinifera]
Swissprottr|Q8LP17|CCD1_PEA2.00E-66Carotenoid 9,10(9',10')-cleavage dioxygenase 1
trEMBLtr|A5ANK7|A5ANK7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN66950.1}
TAIRAT3G635202.00E-60carotenoid cleavage dioxygenase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000098507838519209+
Transcript Sequence

Network for GWHGAAEX018815

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03055.14RPE65865871.60E-93
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.610
SRR2545915Juvenile tuber20.820
SRP108465SRR5643513five period of Gastrodia elata19.060
SRR5643514five period of Gastrodia elata19.770
SRR5643515five period of Gastrodia elata20.880
SRR5643524five period of Gastrodia elata18.920
SRR5643525five period of Gastrodia elata32.300
SRR5643528five period of Gastrodia elata45.120
SRR5643658five period of Gastrodia elata53.870
SRR5643659five period of Gastrodia elata35.650
SRR5643660five period of Gastrodia elata35.250
SRR5643661five period of Gastrodia elata33.220
SRR5643662five period of Gastrodia elata31.740
SRR5643663five period of Gastrodia elata30.820
SRR5643664five period of Gastrodia elata35.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.770
SRR6049655Rhizomagastrodiae_C368-T10_good_139.310
SRR6049656Rhizomagastrodiae_C368-T07_good_133.580
SRR6049657Rhizomagastrodiae_C368-T07_good_126.340
SRR6049658Rhizomagastrodiae_C368-T04_good_112.880
SRR6049659Rhizomagastrodiae_C368-T04_good_111.410
SRR6049660Rhizomagastrodiae_C368-T01_good_116.520
SRR6049661Rhizomagastrodiae_C368-T04_good_118.940
SRR6049662Rhizomagastrodiae_C368-T01_good_114.910
SRR6049663Rhizomagastrodiae_C368-T01_good_117.670
SRR6049664Rhizomagastrodiae_C368-T10_good_131.420
SRR6049665Rhizomagastrodiae_C368-T10_good_131.420
SRP279888GastroGastrodia elata tuber 42.06
JuvenJuvenile tuber54.52
Mother_GastroMother tuber of Gastrodia elata 14.26
Mother_JuvenMother tuber of Juvenile 18.41