Detail information of GWHGAAEX018825/evm.TU.scaffold_99.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG00872.00E-16GTPase Rab11/YPT3, small G protein superfamily
nrgi|289370|gb|AAA68983.1|1.38E-15small GTP-binding protein [Brassica napus]
Swissprottr|Q9SIP0|RAA5D_ARATH7.00E-17Ras-related protein RABA5d
trEMBLtr|Q39345|Q39345_BRANA5.00E-16Small GTP-binding protein {ECO:0000313|EMBL:AAA68983.1}
TAIRAT2G316802.00E-16RAB GTPase homolog A5D

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000098580691581570-
Transcript Sequence

Network for GWHGAAEX018825

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras891301.00E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding
GO:0003924Molecular FunctionGTPase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.830
SRR2545915Juvenile tuber2.530
SRP108465SRR5643513five period of Gastrodia elata0.790
SRR5643514five period of Gastrodia elata0.000
SRR5643515five period of Gastrodia elata0.730
SRR5643524five period of Gastrodia elata0.320
SRR5643525five period of Gastrodia elata0.970
SRR5643528five period of Gastrodia elata1.630
SRR5643658five period of Gastrodia elata0.930
SRR5643659five period of Gastrodia elata0.320
SRR5643660five period of Gastrodia elata0.710
SRR5643661five period of Gastrodia elata0.710
SRR5643662five period of Gastrodia elata1.460
SRR5643663five period of Gastrodia elata0.540
SRR5643664five period of Gastrodia elata3.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.340
SRR6049655Rhizomagastrodiae_C368-T10_good_12.160
SRR6049656Rhizomagastrodiae_C368-T07_good_10.400
SRR6049657Rhizomagastrodiae_C368-T07_good_10.710
SRR6049658Rhizomagastrodiae_C368-T04_good_10.840
SRR6049659Rhizomagastrodiae_C368-T04_good_11.480
SRR6049660Rhizomagastrodiae_C368-T01_good_11.130
SRR6049661Rhizomagastrodiae_C368-T04_good_11.840
SRR6049662Rhizomagastrodiae_C368-T01_good_11.740
SRR6049663Rhizomagastrodiae_C368-T01_good_12.380
SRR6049664Rhizomagastrodiae_C368-T10_good_10.330
SRR6049665Rhizomagastrodiae_C368-T10_good_10.330
SRP279888GastroGastrodia elata tuber 0.00
JuvenJuvenile tuber0.33
Mother_GastroMother tuber of Gastrodia elata 0.70
Mother_JuvenMother tuber of Juvenile 0.00