Detail information of GWHGAAEX018827/evm.TU.scaffold_99.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3219 | 2.00E-62 | Transcription initiation factor TFIID, subunit TAF11 |
| nr | gi|225462089|ref|XP_002277017.1| | 2.31E-79 | PREDICTED: transcription initiation factor TFIID subunit 11 isoform X2 [Vitis vinifera] |
| Swissprot | tr|Q9M565|TAF11_ARATH | 6.00E-63 | Transcription initiation factor TFIID subunit 11 |
| trEMBL | tr|D7TQZ4|D7TQZ4_VITVI | 9.00E-80 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI32917.3} |
| TAIR | AT4G20280 | 2.00E-62 | TBP-associated factor 11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 611882 | 623605 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018827
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04719.13 | TAFII28 | 98 | 183 | 1.30E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03135 | TAF11 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006367 | Biological Process | transcription initiation from RNA polymerase II promoter |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.240 |
| SRR2545915 | Juvenile tuber | 2.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.290 |
| SRR5643514 | five period of Gastrodia elata | 1.460 | |
| SRR5643515 | five period of Gastrodia elata | 1.330 | |
| SRR5643524 | five period of Gastrodia elata | 2.090 | |
| SRR5643525 | five period of Gastrodia elata | 2.710 | |
| SRR5643528 | five period of Gastrodia elata | 2.890 | |
| SRR5643658 | five period of Gastrodia elata | 2.250 | |
| SRR5643659 | five period of Gastrodia elata | 2.340 | |
| SRR5643660 | five period of Gastrodia elata | 3.210 | |
| SRR5643661 | five period of Gastrodia elata | 2.800 | |
| SRR5643662 | five period of Gastrodia elata | 2.760 | |
| SRR5643663 | five period of Gastrodia elata | 2.690 | |
| SRR5643664 | five period of Gastrodia elata | 2.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.37 |
| Juven | Juvenile tuber | 1.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.27 | |
| Mother_Juven | Mother tuber of Juvenile | 0.84 |