Gene detail

Detail information of GWHGAAEX018835/evm.TU.scaffold_99.44

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672112502\|ref\|XP_008806288.1\|	PREDICTED: protein NLP3 [Phoenix dactylifera]
Swissprot	tr\|Q5NB82\|NLP3_ORYSJ	Protein NLP3
trEMBL	tr\|K7VRG4\|K7VRG4_MAIZE	Uncharacterized protein {ECO:0000313\|EMBL:AFW80505.1, ECO:0000313\|EnsemblPlants:GRMZM2G375675_P01}
TAIR	AT1G64530	Plant regulator RWP-RK family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	742351	766357	+

Transcript Sequence
>GWHTAAEX018835 CATCCCCCCCCCCAATTTCAGTTGATCTACTCATTTATTTGTTTATTTTTGGTCAACTAATGATTTATGTGCCTGCGAATCGACGGCGTTAAAATAGAAAAAAAAAGTGCTGATTCTGCATGACTGTGTACAAAATCAGCATTTGGCTATAAGTATTTGAGTGTGATGTAAGAATTTTTATGAGTTTATCCATATTTCCTCCTTATAGTCTTCACACATGATGTTCCGATTAACCGGACTCAAAGTCGCCGAAGATGCCGATGAGAAGCGCGAGCATGTGTCTATGAGCACAGCCGGCCTGCTTGATCTTGACGCTGAGGTCGCAGAGGAGAAGCCCGAGCATCTCTCCATGGATGGCTTCGTTCCTCTTGATCTTGACTCTGCATCTGCCTCTTGTCTGTTTGATTCTGCGGCCACCGCAGCCTTCTCTGTTCCACTCTCGCAGCCCTCTCTGCCGTCAGGAAGTTCGTCGTATCTTCCCTTTTCTATTCCTCCGCCGCTATCTCCTCTGTGGATATTTGACGACAAGCCCGACGAAATCGCCGAAAAACTTGAGTCAGAGTTGGGGGATGGTGAATTTAACGATGAGCCAAATACTGAGAAATTAATGTCTTTTCCTTTACCATCAATTAAAGCAATTTCTGATAGATCCTATCTGATAAAGGTGAGAATGATGCAAGCACTCCAATATATAAAGGAATGGACAAAACAACATATAATGGTGCAGGTTTGGGCACCTTTAAGGAACGGAGATCAATATGTTCTCACAACATCTAAGCAGCCCTTTGTGATTGATCCTCATTATGATAGCCTTCTTCATTATCGAATGGCATCATTGATGTATAGGTTTTCAGTTGATGGAAATAATGATGGGATTCTTGGCCTTCCTGGCCGGGTATTCAGCCAAAAATTTCCTGAATGGACGCCCAATGTGCAGTACTACAGCAGCAAAGAATTCCTACGCTTAAGTCATGCTCTTGCTTACAATGTGAGGGGGAGCCTGGCTTTACCCGTATTTGAACCTTCACAGCAGTCCTGTGTTGGTGTGGTTGAGCTTATAATGACATCAGAAATAGTTAACTATGCTCCAGAGGTTGATAAAGTGTGCAGAGCTCTTGAGGCGGTCAATCTGAGAAGCTCGGAAATCTTTGCTCATCATAGCATAGAGGCAAGTGATGAAAGATGCCAAGCTGCCCTTACTGAAATTCTAGAGATTCTAACTGTTGTTTGTGAAGCCCAGAAGTTACCGCTTGCTCAGACATGGGTCCTATGCCAGCAAGGCATTCGAGCACATCATGATGGATCTAGAAAGAGTAATTCGACCTTTAATGGAAGTTGCACGGGACAGTTCTGCATTTCAACAACTAATGCAGCCTTTCATGTAGTTGATGCTCATCTGAGGGGATTTAGAGATGCCTGTTCTGAGCATCATTTGCAGAAGGGTCAAGGAGTTGTAGGTAAAGCATTTTCTTCTCGGCGCCCTTGCTTCTGCAGCGATATCACCATGTTCTGCAAAACCGAGTATCCTCTGGTTCACTATGCGCAGATGTTTGGTTTAGGGGGTTGTCTTGCTCTTTGCTTTCAGAGTTTCCATTCAGAAAATGATGTTTATGCTGTAGAATTTTTTCTTCCATTAGGCTGCAAGGGACCCATGAACTATCATGCGCTATTAGAATCCATTTTTGCCATGGTGAAGCAGAACTTTCAGAACATAAAAGTAATCACTGGGACAGATGTGAAAAGACTGTCACATGAAATGATAGAAATGATTACTTACGAGGATCATATAATGAAACATCTTCAATGTGCATTGCCTGTGACTAATGCTTCCCTTGAAGGTCTAAATGAACATGAGAGTAACGGTAATACAACATATAATACACCAGAAGAGCGTATGATTACATGTAATAATTTTGAAAAAAATACAAATCTTTCTGTAAATGGTGGGTCTGTTTCTGCCTCGAATTTCATTACCAATAAAATATCAGGGAGGAAGAGGGGCAAGGCTGAGAAAATAATTAGCTTGGAGGTTCTTCAACAATATTTTGCAAGGAGTATCAAAGATGCTGCAAAGAGCCTTGGTGTTTGTACCACTACAATGAAGCGCATTTGCCGCCAACATGGCATTTCCAGGTGGCCGTCACGCAAGATCAATAAGGTCAATCGTTCTATTTCAAAGCTCAGACAAGTTATTGAGTCATTTGAGAGTTCTGATTCTACATTCAACCTAAATCCTCTGGTATGCCCACTTCCAGCTGCTTCCAGACCGGTGTCTTTGCCTGTTCATTTGGATAGGGATTCTGTAGAAAGAGATGAAGACACTCCACATTTCAAAACATTGGAAGTTGATACTAAAGCCTCTGAAGGCAACATGAAATCGCCTGTGTCTCAAGCTTCAGATTCTAGTTTCAGAAATCTGGGTCATGATGCATGTGGGACTGATAATTGTTTTTCTACAAATTCAAAACTGTTTACTAGTACTTATAAATTTCTAGAAGATCAAAACACTAATCCTCTAATATCAACAACCAATATTATAGCAACTGAGCGTGAATATCGAGATGTCGACATGCTTATTGAAGATTCTGCGAGCTCAAAGCTAGGAAGTAATCCTCCGTCCACTTCTGTTCCAGAGTCAAAAACATGCATCATCAAGGCTTGTTATAAGGGAGACATTATAAGGTTCCGGTTGGCAAATGATGCCAATTATGCAGCACTTAATGTGGAGATCAGTAGGAGGCTAATACTGGATGTGGGCACATTTGATGTCAGGTATTTGGATGAAGATAATGATTGGGTTAACCTTACTTGTGATGAAGACTTAGAGGAGTGCTTGAATCTCTCAACATTACATGGTTCATCGTCAGCTATCAGGCTCTCAGTTCAGGATATTTGCACACATCTCGGAAGCTCTTGTGAAAGCTCTAGCAAATGTTCGGTACAAGTATGTGCACATTGTGTAACTTAGAACAATTGGTAGGCATATTCGTTTTTCTTTATTTTTTTGCTGTAGTATGTATTTATAGATTTGTTAATGTTTTAATCACATATCCTTATATCAAGTCAATAAAATTCGATCACATAATTTTGTTTACTCTTCTGTCTAATTT

Network for GWHGAAEX018835

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.14	RWP-RK	601	648	1.40E-25
PF00564.23	PB1	812	891	2.20E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.780
SRP064423	SRR2545915	Juvenile tuber	12.630
SRP108465	SRR5643513	five period of Gastrodia elata	7.470
	SRR5643514	five period of Gastrodia elata	7.530
	SRR5643515	five period of Gastrodia elata	7.170
	SRR5643524	five period of Gastrodia elata	7.140
	SRR5643525	five period of Gastrodia elata	8.870
	SRR5643528	five period of Gastrodia elata	9.770
	SRR5643658	five period of Gastrodia elata	9.860
	SRR5643659	five period of Gastrodia elata	5.290
	SRR5643660	five period of Gastrodia elata	4.880
	SRR5643661	five period of Gastrodia elata	4.290
	SRR5643662	five period of Gastrodia elata	5.940
	SRR5643663	five period of Gastrodia elata	5.060
	SRR5643664	five period of Gastrodia elata	6.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.510
SRP279888	Gastro	Gastrodia elata tuber	9.27
	Juven	Juvenile tuber	6.98
	Mother_Gastro	Mother tuber of Gastrodia elata	17.27
	Mother_Juven	Mother tuber of Juvenile	14.59