Gene detail

Detail information of GWHGAAEX018836/evm.TU.scaffold_99.46

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1241	Karyopherin (importin) beta 1
nr	gi\|743755621\|ref\|XP_010912456.1\|	PREDICTED: importin subunit beta-1-like [Elaeis guineensis]
Swissprot	tr\|Q9FJD4\|IMB1_ARATH	Importin subunit beta-1 {ECO:0000305}
trEMBL	tr\|E0CV68\|E0CV68_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23029.3}
TAIR	AT5G53480	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	772561	792406	-

Transcript Sequence
>GWHTAAEX018836 ATGCATTATCAGTGCTTGTGCTTTGCAAAATCATCTGCCTTGTATCCTTCTATACAATGCGTCATCAAATCCTTCAAGATTTTAGCTCAACATAGGACAACTGTCAAGTTCCGTGAAATTACCAACTCGGCCTCAAAGTGGTTTCCGCCTAAACTCCGCATTCCGCAGCCACACCCCTCTCTTCTCTTCCTAGGGTTTCTGTATGCTCTCTGTTCCTACTTGATCCGACCATCAGATCTTCGACGTACTCCTGTTGATTCCTCGGAAGCTGAGGTCGGCATCAATTCCATATGCGCTATGGCAATGGAAATTACCCAAATCCTTTTAAACGCACAGTCAATAGATGCCAATGTTCGTAAACATGCAGAAGAAAGCTTGAAGCAGTTCCAAGATCAAAATTTTCCTAGTTTTTTGCTCTCTCTTTCCAGTGAACTAGCAAACAATGAGAAGCCTGCGGATAGCCGTAAATTAGCTGGTCTTATTCTCAAAAACACTTTGGATGCGAAGGAGCAGCTCAGGAAAAATGAGCTAGCTCAGAGGTGGCTTTCATTAGATGCCTCGGTGAAGGCTCAGGTGAAAGGATGTTTGTTGCAGACCCTTTCTGCCCCTGTTCCTGATGCTAGATCTACTTCTTCTCAAGTCATTGCAAAGATTGCTGGGATTGAGCTGCCACAAAAGCAGTGGCCTGAACTTATCGGCATCCTTTTATCAAATATTCACCAGTTACAACCTCATGTTAAGCAAGCAACACTTGAAACGCTTGGTTATTTATGCGAGGAAGTTTCTCCTGAAGTTGCAGATCAAGACCAAGTGAACAAGATACTCACAGCAGTTGTCCAGGGAATGAATGCTTCTGAGGGAAATAATGATGTTAGGTTGGCAGCCACCCGTGCACTTTATAACGCGTTGGGATTTGCACAGGCAAATTTCTCAAATGACATGGAGAGGGATTATATTATGAGAGTTGTTTGTGAAGCAACTTTATCGCCCGAGGTCAAGATTCGTCAAGCAGCATTTGAGTGCTTGGTTGCTATCTCCACGACTTATTATGACAAGCTCTCTTCTTATATGCAAGACATATTTAATATTACTGCTAAGGCAGTGAAGGAGGATGAGGAGCCCGTTGCCCTTCAAGCCATAGAATTCTGGAGCTCAATCTGTGATGAGGAGATTGACATCTTGGATGAATATGGAAGTGATTTTACGGCTGATTCTGATATTCCTTACTTTTATTTCATTAAACAGGCCCTGCCGGCACTAGTTCCTTTGTTATTGGAAACTCTTCTTAAACAGGAGGAAGGCCAAGACCAGGACGAAGGGGCCTGGAATATTGCAATGGCTGGTGGAACATGTTTGGGTTTGGTTGCGCGTACTGTGGGAGATGACATAGTTCCTCTTGTAATGCCTTTCATAGAGGAGAACATAACAAAACCAGATTGGAGACAACGAGAAGCAGCGACATATGCATTTGGTTCTATTTTGGAAGGGCCTTCACCTGAAAAGCTCACCCCTATAGTAAATGTTGCACTGAATTTCATGCTCACCTCATTGATGAAGGACCCCAACGATCATGTCAAGGACACTACTGCTTGGACTTTAGGACGAATTTTTGAGTTTTTGCATGGTTCTACTGTGGAAACATCTGTTATAACCCATGAGAATTGCCAGCAGATTCTCACTGTACTGCTTCAGAGTATGAAAGATGTTCCTAATGTTGCTGAAAAATCTTGTGGTGCTCTATATTTTCTCGTGCAAGGTTATGAAGACTCTGATTCAACATCACCATTGTCGCCTTTCTTTCATGATATAATCCAAGCTCTTCTATCCGTAACACACAGAGACGATGCTGGTGAGTCACGCCTGCGGACTGCAGCTTATGAAAGCTTGAATGAGGTAGTTAGGTGCTCAACAGAAGAAACTGCCTCCACAGTATTGCAGCTGGTGCCAGTTATCATGATGGAACTGCATCAGACGCTGGAGGCACAGAAGCTTACCATGGATGAGAGAGAGAAGCAAAATGAACTTCAGGGCCTGTTGTGTGGCTGCCTTCAGGTCATTATTCAGAAGTTGGGTTCAGCTGAATCTTCAAAATATGCATTTATGCAATACACGGATCAGATGATGGATCTGTTTTTGAGGGTATTTGCTTGCAGGAATGCTACGGTGCATGAAGAGGCTATGCTGGCTATTGGTGCTCTGGCATATGCAACCGGTCCAAATTTTGTAAAGTACATGCAAGGATTCTATCCCTATCTTGAGATGGGTCTTCAAAATTTTGAGGAGTATCAGGTTTGTGCTATAACTGTTGGTGTTGTTGGAGATATTTGCAGGGCACTGGAGGAAAAAATACTGCCTTTCTGTGATGGAATCATGACACATCTTTTGAAGGATCTTTCAAGTAATCTGTTGCACCGGTCTGTGAAGCCCCCCATTTTCTCATGCTTTGGCGACATTGCCTTGGCGATAGGGGAGAACTTTGAAAAATATCTGATCTATGCAATGCCTATGCTTCAGAGTGCAGCTGAGTTATCGGCACATGCTGTGAGTGTAGATGATGAAATGCTTGAGTACACAAATCAGCTCCGGAATGGCATTCTAGAAGCCTACTCTGGGATTTTACAGGGATTCAAGGTCTCTCCAAAGACCCAATTGCTGATGCCTTTTGCCCCTCATATTCTGCAATTCCTGGATAGCCTGTACAATGAGAAGGACATGGATGATATTGTGACCAAGGCTGCGATAGGTGTGCTCGGAGACTTAGCTGATACTTTGGGCACCAATGCAGGTCCCTTGATAAACCAGTCTGTTTCAAGCAGAGAGTTTTTGGAAGAATGCCTTTCTTCTGATGACCATTTGATCAAAGAATCTGCTGATTGGGTTAAGTTGACAATATCCCGGGCCATTTCCGGCTGATGGTGTGTTAAGGCATATACTCAGTAAAAAAGTGTCTCTGCATATGCATCTGGGTCGTGTCAGAGTCCGGTCCGAAATTTCGTGCATTCATTATTGACGCAAGCATTGACATCCGGGCTGAGCCAGGATGTCATTGCTATCTCGCATGCATCAGTTAGTCGGGTCCTTATTTTCTCGTTTTTTTTTCTCGTACTTACTCTGCCAGCTTCGAAACCCAAAAGCCGCATCCATGATCCTCCCCAGTTCCAGAAAATTGAGGGAATCAAGCTATGTTGGGGTGAGCTTTCTCTTGATGAAACCATCGCTTTTGTGTCGAACCCATTATGGGTTCGAAACAGAGGTGTTTGAGTGGTTTATCAACTTTTCTCAGCAGATGAACAAGAACCTGCAGTGGGAGGGTCTGATGCATACAATCCAGCATCTGTTTCTATGGTCAAGTGGGAAATCAATCTGCTTATTTTTCAGCTTGATGCCCAAATTCACCATTTTAATCTATTTTTCATGGGAATTTTGTGATTTGTCTTTTGCCTGTTGTTGTTAATTATTTATTATTATGGTCCCCCTGCATTTCATCCAAATATTTTCATATATA

Network for GWHGAAEX018836

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.18	IBN_N	122	200	8.80E-13
PF13513.5	HEAT_EZ	480	536	3.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14293	KPNB1, IPO1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0008536	Molecular Function	Ran GTPase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	135.550
SRP064423	SRR2545915	Juvenile tuber	159.390
SRP108465	SRR5643513	five period of Gastrodia elata	77.960
	SRR5643514	five period of Gastrodia elata	78.750
	SRR5643515	five period of Gastrodia elata	73.390
	SRR5643524	five period of Gastrodia elata	71.840
	SRR5643525	five period of Gastrodia elata	93.330
	SRR5643528	five period of Gastrodia elata	82.670
	SRR5643658	five period of Gastrodia elata	102.790
	SRR5643659	five period of Gastrodia elata	98.950
	SRR5643660	five period of Gastrodia elata	102.460
	SRR5643661	five period of Gastrodia elata	99.650
	SRR5643662	five period of Gastrodia elata	119.000
	SRR5643663	five period of Gastrodia elata	111.770
	SRR5643664	five period of Gastrodia elata	110.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	117.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	112.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	120.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	118.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	135.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	167.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	129.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	150.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	106.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	131.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	87.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	87.680
SRP279888	Gastro	Gastrodia elata tuber	105.53
	Juven	Juvenile tuber	104.40
	Mother_Gastro	Mother tuber of Gastrodia elata	65.52
	Mother_Juven	Mother tuber of Juvenile	89.64