Gene detail

Detail information of GWHGAAEX018841/evm.TU.scaffold_99.51

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1474	1.00E-120	Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins
nr	gi\|743755628\|ref\|XP_010912504.1\|	0	PREDICTED: transcription factor GTE4-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9LNC4\|GTE4_ARATH	3.00E-121	Transcription factor GTE4
trEMBL	tr\|A0A061DW54\|A0A061DW54_THECC	2.00E-162	Global transcription factor group E4, putative isoform 2 {ECO:0000313\|EMBL:EOX94208.1}
TAIR	AT1G06230	1.00E-120	global transcription factor group E4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	847458	870007	+

Transcript Sequence
>GWHTAAEX018841 CAAATGGGCGTTAATGTTCCGGTTCCCGCCCTAATCGCCGTTAGATTAAACACCGTTGTGAAATACCGGGTTACTGTATCCACCAGTATCCACCATTCCGCATATTCCACGTGTACAATTTTGCGCGATTAAGCCATTGAAAATGCGGACTGGTGCGTTTTTAGCGGAAGATGTAGCCGTCCGAACAACGCTCTCAGCATCTGAACCGTCAGGACTTTTTAGATGCGCATCGATGAGATAGAAAGAGAAGTCGGCGAATTATGCGAGTTGGTCCGCAGGTTCCACTGAAACCCTAGCACCGCCTCTTCTCCCTTTCGTTTCGTATATCGATCATCTTCTTTCCGCTACACCATCGTTCTCGTAGTAGTTACCGATTCGACTTCTTCTGGCCGCAGCTGTTCTCACCGAAGAGCCCTTAGATATATCCTTGATCCGTCAGTTCCAATCTAGGGTTCGAAGGGAAGGGGCCGCAACCTTTGATGTATGGCGTCTGGTCCTCTGTTGGATGGGGGCGGCGATGGCTCCCACGAAAAGCGGCGGTGGGTGGAGAGCAAGGTGTACACCCGCAAATCCCACAACAAAAACCCCAAGCCGAACCCTAATCAGAACCCCCTACCTCTTCAAATTCATCCGCCGGCGTCGTCGCAGACCTTAGCCACCACTACCGAAGACGTCAACTCTTCCTTGCAGCAGCTGCAGCCTCCACCTCAAGAAAACCACCGGGCACCGGTGCCTCATCAGTCGTCTGCTGCGTCTGACGAAGACGCCTGCAGCCTCAACCGCAAGCCCGGCGACAATCACGATCTCTCCAATGGTCAGAACCGGTTTATAACCATCAATTTCGCTTCCAAGACAAAGCACGAGGCTCGGGAACTACGCAGGAAGCTAACTTCCGAGCTGGAACTTATCCGTTCTCTTACCCGGAAACTTGAAGCCCGGCAGTGTCAGCTTTCCGCCAACGACACAGGTAAAGCGGTATCTGTCACTGGTCACAGTATATCTCCGCTCTCCGCCAATGACGCTGGAGCTTCTTTCCCCATTAAACGGTCTCAGATAATCTCAGAGGCTGCTCCGACTACTGCCCCACCAGTACGTCACCAACTGAGTGTATCTGTCCCAGCCAGAGCTGGCGGGGATAATGAATATCGTGATTTGATGGAAAAGGAGAAGCGAACTCCAAAGGCTAACCAGTATTATAAGAATACAGATTTTCTTCTTGGGAAGGATAAGTTCCCACCACTGGATCATAGCAAAAAGTCCAAGGCGAATGGGCACAAGAATGGCATGCAGTCTGTGGAGAACAAGTTTTATGAACAGGCTTTCAAGAAGTGCGGGATTCTACTTTCAAAGCTTATGAAGCACAATCATGGCTGGGTTTTCAACAGTCCAGTTGATGCCGATGCTCTTGGCATTCCAGATTATCATAGAATTATCAAACACCCAATGGACCTTGGTACTGTCAAATACCGGTTGAGCAAAAACTGGTACAAAACTCCTAGAGAGTTTGCTGAGGATGTGAGACTCACATTCCGCAATGCAATGACTTATAATCCAAAGGGGCAGGATGTTCATATCATGGCTGAGCAACTTTTGCAGATATTTGAGGAGCGATGGCTAGTCATAGAGGCTGACTTAGCTTTCCATCATTTTCCTCCCCCGTTAAAGAGGCTTCCACCTATTGACCCATGGAAGACTCTAGATAGGTCGGATTCAGCTGTTCATCATGCAGCAGCAGATTTGAAGACAAAATCTCTGAATCAAATAACACATTCCGGACGCCCTCCAGCATTGAAGAAACCCAAGGCTAAGGACCCAAATAAGCGGGACATGACATTTGATGAGAAGCAGAGGCTGAGTGATAATCTGCAAAAACTCCCTTCGGAAAAACTAGACATGGTTGTTCAGATAATCAAAAAAAGGAATTTTTCACTGAGCCAGCATGAGGATGAAATTGAGGTGGACATTGACAGTGTGGATACTGAGACTCTTTGGGAGCTCGATAGGTTTGTAACCAACTATAAAAAGAGTTTGAGTAAGAATAAGAGGAAAGCAGCCCTAGCTATTCTTGCAAGGGCAGAAAATGAGCAGTTTGCTCAAGAGAGGGAGCATGGAATGTTTCCTGGTGCTGCTCCCCTGGAGTCCTTGAAGGAAAACATGACAGATCTAGTTGCAAAAGGTGCCTCATCACCAGTTGGAGCAAGAATTGGGGAAAATGGAAGCAGATCAAGCAGTTCAAGCAGCTCTAGTAGTGATTCTGGATCAACGTCCAGTGATTCAGATAGCGAAAGCTCTTCTGGGTATGGATCTGATGCTGCGCAGTCACCTGGAGCATAACAGACTGCCATACTGATGGATGTGAATCATAGGGAGACTGCAGAAACATTGATTTAGGCGGATGAGCCGAGGATGTCTTTATATTTCGCAGATGTACCATAGGGTTTGGCTTATTATGGATTCTGATGCTTCAGAACAGCTTTAAAAACTGTTATATTGCAGTCTTGGAGGGGTGCGGCAGCAGCAACTGGTATTTACTGCCATTTCTTATTTACGGATATATATATATATATATATATAATATAATATAATATAAAATAGGGTCTGTAGTGTAGCCGGGACTACTATTTATCAGGGTGGTTTTAGGGTGTCTTAGATTGTGCATATATATTATTGTTATTGCATGATGATCGATTGTAATACATGAGTTTAGGGTTTAGAGAGTATGGGGTTCTGAGAGGAAGGAATCCACGCATTGATTGAAATTGTGAGCTAAGCGCATTGAACTTGAGTATGGAATATGATCTCTGTGTGCTGCTGCTTTAGAAGATTTATTTATTAGCACAAGCTATTTGAAGCATTACTTGCATGCTGCAAATTGTTATAAAATAGAGTTGATTTTGTGGTCTTGATGTTTTGATATATAGAAGTTTGTGGTGTGCATGTAATATTTGAAAGTCTTGGGTTAAATGTGCAAATGAAGAAGCCATATGGTATTTTGGCGTAATATTTATGTTAAATCTGTACGTGTTTTTTAGTCATTTTTAATGCATGATAAAGTTGCATAACATGAATTATTTTTGTTGCTCGAGAATGTTATGCATCTTAATTCATTTTTAACTAATCAAATCTGTTTATTTAGTTTACCCATTTATTGAGCCATTTCTTATATATATATATGTAACATGGGGCATAAGCTAACCGAGAAGTTTGAGTTAACTATTATGAGCTAGTCAGCTCATGAGCACTCATTAGCCAATTAATTTATTGAAAAAATATAAAAGAGATTTATGATTATATGCTATAATTTAAACAGTATTACTTGAATTTTGACATAATTCATATGTATTGTGCATTGATAAATATAAACAAATAAGTTCATGTGATGTGTTGATGAGTAGAGTTGGTGTTGACTTAACTTGTTTGCTCATTAAACTTAGCTCATAAGCTATTTTATGAAGCTGAGCTTAAGTAACATCATAATATAATATGATCATTGTCTTGGTTATGCACAAATTTCATTTTAAATAAATGGAAATACTTTGGTACTAGCAAAGTTTTAGTGATTTAAAATGTGGAAGTATTACTTAATTTTTTTCAATTCCAAGAGATCGCATATGCTACTAAAAGTGCTATTTGATGTTCGAGTCCGATGAAAAACTACCTTAAAAAAAAGCTAAAACTCGGTGTTAGGTGCCAGGGCTTGAGACTGATGTTGGAGGAGAAAGTATGCTAAATGACAATATTGGAGATCTGCGTTGGATGATTTTGTTGGATTGTTGTGGATGCAAGTGTTTAAAGCTGAGCCTAAACTTGGGCTAGTTTGGTCTTTTTCTCAATTTTGGCTTGTTTTTTTTATTTAATTTAAAATTTTGTATGTCTTTGGTCCTCAAATACTATCTAGGCTTATAATTAAAATTTGTTCATGTTTGTTTTGTTTTTTATGGAGCTTGATTGGATCAGATCATGATGTAATGTCTACCCGATCCTCAATTTCGTCAATTTATATATTGTGCTGGTATCATAGCCTCTGTCTATATATGAGTGTTAAGGAGGTTGGTGATAGATATGTTTGGTGGGAACAATCCTCTTCAAGTGGAGTGAGGAAGAAAGTTGTGCATTCATCTATGTTTTTTTTTTTGATAGTAAATTTATGTAGTGTAGTGGCTGTAATTTTTCATAATTTAGAGTTTTTTATGTAAAAATGTAATCATTTTTTTTTTGCTGCGATCCTCTGTTTTATTTGATTTTGGTGCTTCATTAATTTTCC

Network for GWHGAAEX018841

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00439.24	Bromodomain	286	367	7.90E-19
PF17035.4	BET	449	510	6.40E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.140
SRP064423	SRR2545915	Juvenile tuber	20.090
SRP108465	SRR5643513	five period of Gastrodia elata	16.130
	SRR5643514	five period of Gastrodia elata	12.460
	SRR5643515	five period of Gastrodia elata	18.030
	SRR5643524	five period of Gastrodia elata	13.950
	SRR5643525	five period of Gastrodia elata	31.760
	SRR5643528	five period of Gastrodia elata	32.020
	SRR5643658	five period of Gastrodia elata	31.130
	SRR5643659	five period of Gastrodia elata	22.810
	SRR5643660	five period of Gastrodia elata	24.190
	SRR5643661	five period of Gastrodia elata	22.700
	SRR5643662	five period of Gastrodia elata	26.420
	SRR5643663	five period of Gastrodia elata	22.900
	SRR5643664	five period of Gastrodia elata	23.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.050
SRP279888	Gastro	Gastrodia elata tuber	20.64
	Juven	Juvenile tuber	19.22
	Mother_Gastro	Mother tuber of Gastrodia elata	23.32
	Mother_Juven	Mother tuber of Juvenile	20.89