Gene detail

Detail information of GWHGAAEX018845/evm.TU.scaffold_99.55

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|209364023\|ref\|YP_001424629.2\|	2.00E-10	glycine-rich RNA-binding protein [Coxiella burnetii Dugway 5J108-111]
KOG	KOG0118	1.00E-98	FOG: RRM domain
nr	gi\|720070498\|ref\|XP_010277758.1\|	1.48E-139	PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera]
Swissprot	tr\|Q9LKA4\|UBA2C_ARATH	3.00E-99	UBP1-associated protein 2C
trEMBL	tr\|A5ADJ5\|A5ADJ5_VITVI	1.00E-128	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66609.1}
TAIR	AT3G15010	1.00E-98	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	888866	891761	-

Transcript Sequence
>GWHTAAEX018845 ACGAGGCCCACGGTTTTCTTAAAAATGTCTTTCTAGTATAAAAATGGACCGCTTGCTGTGCCTCCGCCTTGATTGGCTGTTGCCTAGGGTTAGGTTTTAGTGCACAGCGGCCCCGCCATGGACTGTTCATCAACGAAAAAGCGCAAGGCCGACGAGAATGGTGCCGCGACCATCTCTTCCCCTTCGGCTAGCCTCACCCCCGAGGACGCTCGCAAGCTCATCGACTCTTTAAATCAGGAGCAGCTAATGAGCATCATCGCCGAAGCCATCTGCCGAGATTCCGGCGTTCTTGATGCCGTGCGCGTCGTCGCCGACCATGATCCCGCCCAGAGAAAGCTCTTTATCCGTGGCTTAGGCTGGGAAACCACCACCGAGAAGCTCCGTTCAATCTACTCCAAGTACGGAGAGCTCGAGGACGCCGTGGTCATCACAGACAAAGCCACCGGCAAGAGCAAGGGCTACGGTTTTGTGACCTTCCGCCATGCCGATTGTGCTATTCTTTCTCTAAAGGAGCCCAACAAAAAGATTGATGGTCGGATGACAATTGCCCAACTTGCTTCTGCTGGATCCGCCGGCTCCACTGCCGCAACTCCCGCTGCAGATATTTCCCAGCGGAAGGTCTTTGTTGGCCATGTTTCCTCTGACATGCTACCTGACCGCCTTCTCACTTTCTTCAGCTCTTTTGGTGAGATCGAGGAAGGTCCAGTGGGTCTTGATAAACAGACGGGAAAGTTCAGGGGCTATGCCTTGATCGTTTACAAGACTGCAGAAGCTGCTCAAGCAGCTCTTGCCGAACCAGTTAAGTACATTGACGGAAATGTTTTGCAGTGTAAGTTGGCCATTGATGGCAAAAGGGGCAGAACTGGGGCAGCTGGCCAAGGTGCTGGATTGCCTGTTGCTGGATTTGATAGCCTTGTTGATGGGATGGGAATGGCTTCTCAATCATCATTACCTGGCTCTCTTACGGGCCATTATGGTGGTGCTGTAGGCGGTGGATACTCTTCATATGGTGGCTTTGCGGTAAGTGGTCTGCCTGCTGGGGTTGCAGCAGGACACAGCCAGCATCAGCATCTGAATTCCTCCATGCACCCATCAATTGGTTTAGGAAATGCAGGTTTGCCATCTATGGGTAGTCAGGCACCCTCCTCATTTACTGGTTCTGGAACTGGGGGTTATGGAGGAAGTGGTTTGAGTGCCGGATCGTATGGCTCATCTGGTCAGTACCCAGGTTCCGGTACCTATGGCGGTTTGGGGATGAGTTCTTCTTTGTACCGAATGGTTCCAGCTGGCTCTGCTGGAATGTCATCTAGTGGTTATTCTGAGAGTGGACCTCACTCTTCTTCCATGTACCAGGGTCAGTACCACCAAAGTACGGGATCATCACCTGGACCTCGGGTTCCACCTGGTGGAGGGATGTATCCGAACATTCACCATTATTTCTAAGGTTTTGGTGACTTTACGGGAGCTAATGAATGCCTCTGCTTTGATGATTGGTATTGATGTTTGCAAACCAAACCAAACCTTTTATGGATGCTATGATTCTTCTCTCTCATTCTATACTCACCGGACGGCAGTCCCCGCTTTATTTATTCTGTATGACTTTAAGGGTTTTTGTTTAAAATGAATGAGCACTTCCTGTGTGGAAGCTATCTTTGTTATCTTCTTTTAAAATGATTCATGCCTTGCATGTGCATGTCTATTTTCAATGATGATGTTTCTTATGATAATGTGTTTTTGACCTGCAATTTTGTCTTGTATTCTAGAGTTATTTTGTGTGTCAAAAGGTTTTGGAAGGCTGCCATTGTCTATTTA

Network for GWHGAAEX018845

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	74	140	4.70E-14
PF00076.21	RRM_1	168	235	4.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	55.940
SRP064423	SRR2545915	Juvenile tuber	90.760
SRP108465	SRR5643513	five period of Gastrodia elata	67.440
	SRR5643514	five period of Gastrodia elata	64.340
	SRR5643515	five period of Gastrodia elata	55.610
	SRR5643524	five period of Gastrodia elata	58.060
	SRR5643525	five period of Gastrodia elata	46.420
	SRR5643528	five period of Gastrodia elata	45.760
	SRR5643658	five period of Gastrodia elata	43.010
	SRR5643659	five period of Gastrodia elata	82.170
	SRR5643660	five period of Gastrodia elata	87.040
	SRR5643661	five period of Gastrodia elata	89.290
	SRR5643662	five period of Gastrodia elata	113.250
	SRR5643663	five period of Gastrodia elata	97.240
	SRR5643664	five period of Gastrodia elata	113.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	105.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	94.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	104.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	101.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	94.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	103.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	100.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	94.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	88.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	92.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	84.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	84.170
SRP279888	Gastro	Gastrodia elata tuber	79.97
	Juven	Juvenile tuber	110.64
	Mother_Gastro	Mother tuber of Gastrodia elata	41.52
	Mother_Juven	Mother tuber of Juvenile	66.08