Gene detail

Detail information of GWHGAAEX018848/evm.TU.scaffold_99.58

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158336013\|ref\|YP_001517187.1\|	2.00E-33	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|695076978\|ref\|XP_009385804.1\|	0	PREDICTED: putative pleiotropic drug resistance protein 7 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8GU88\|PDR7_ORYSJ	0	Putative pleiotropic drug resistance protein 7
trEMBL	tr\|K3YPA4\|K3YPA4_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016096m}
TAIR	AT1G15520	0	pleiotropic drug resistance 12

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	917806	927017	-

Transcript Sequence
>GWHTAAEX018848 TCTCTCTCTCTCTCTCTCTCTTCTGCACACTATACCGACCTTGCCAGATTTCTTCAACGCAAAACAGGAGGCGCTCCGCTTCCTGCAAGATCACGAGGCTTGGATCTCTGAACGTGTAAAGGAGGATGGAGGGCAGCCTGAGAATGTCGAGCATACGAGGGAGCATGAGGAGTGTGAGCCGAAGCGCATCCGCGTGGAGAACAACGAGCGCCGCCTTCGGCAGATCCATTCAAGAGGAGGACGACGAGGAAGCCCTGAGATGGGCGGCGCTTGAGAAGCTCCCTACCTACCATCGGATGAGGAAGGGGATTATGACCGGAGCCGGCGGCGCGCAGGAGGTAGATGTTCAGTGGCTCGGAATCCAGGAGAGGAAGAATCTTTTGGAGAAATTGGTCAGGACTGCTGAGGAAGACAATGAGAAGTTTCTTCTCAAGCTCAGGGATCGGATGGAACGTGTTGGAATCGATAATCCATCTATTGAAGTTCGGTTCACTCATCTCAACATTGATGCCGAGGCGTATGTTGGGAACAGAGGAATCCCGACTTTCTCAAACTTTTTCATGAACAAGATTGCGGGGTTGCTGAGTTCTATGCATATTGTGCCAAGCGGGAAGAGGCCAATTTCTATCCTTAGTGATATTAGTGGGATTATCAGGCCTTGCAGAATGACTTTGCTTCTGGGCCCTCCAGGATCTGGGAAAACTACCCTTCTTTTATCTTTGGCTGGAAAGCTTGATTCAACGCTGAAGGTTTCTGGTGAGGTAACCTACAACGGCCATCACATGGATGAATTTGTCCCTCAGAGAACTTCTGCTTATATTAGTCAGCATGACATACACATTGGAGAAATGACTGTGAGGGAAACCTTATCTTTTTCATCAAGATGCCAAGGTGTTGGAACTCGTTATGATATGCTGACTGAGTTATCAAGAAGGGAAAAGGAAGCAAACATCAAGCCAGATGCAGAAATTGATGTCTACATGAAGGCCATATCAGTGGAAGGGCAGGAGAATGTGGTTACAGATTACATTCTGAAGATTTTAGGATTGGAGGTTTGTGCTGATACCATGGTTGGAGATGCAATGATAAGAGGCATTTCAGGTGGACAAAAGAAGCGTGTTACGACTGGTGAAATGCTTGTTGGGCCAGCAAAAGCACTTTTCATGGATGAAATTTCAACAGGTCTTGATAGTTCAACCACATACCAGATAGTAAATTCCCTTAGACAATCTGTTCACATTCTCGAAGGGACTGCAGTTATCTCACTGCTCCAACCTGCACCTGAAACTTATGAACTCTTTGATGATATCATACTTTTATCTGAAGGGCAAATAGTGTACCAGGGCCCAAGGGAACATGTTTTAGAGTTCTTTGAATTAATGGGTTTCAAGTGTCCTGAAAGGAAGGGAGTTGCAGACTTCCTACAAGAGGTGACTTCAAGAAAGGATCAACAACAGTATTGGGCAGAAAAGGATGAGCCATACACTTATGTGTCTGTTAATGAATTTGCCAAAGCCTTTCAATCCTTCCATGTAGGCCTCAAACTGGGAACAGAACTTGATGCTCCTTTTGATAGGACTAGGAACCATCCTGCAGCACTGACAACTTCAAAGTATGGCATTTGTAAAATGGAGCTGCTCAAAGTGTGCACCTCAAGAGAATGGTTGCTGATGAAGCGAAACTCTTTTGTCTACATCTTCAAAGTAGTTCAGCTTATCATTCTTGGTTTAATTGCGATGACGGTGTTCTTTCGAACGAAGATGCACCGTAATGGGATAGAGGATGGGGTCATCTTTTTGGGTGCAATGTTTCTTGGCCTTGTCACTCATCTGTTTAATGGATTCGCAGAACTTGCTATGAGCATTGCAAAGCTTCCCATATTTTACAAGCAAAGGGACCTCCTCTTCTATCCCTCATGGGCCTATGCACTACCTACGTGGATCCTCAAGATACCAATCTCTTTTCTGGAATGTGCTGTATGGATTTGCATTACTTACTATGTCATTGGTTTTGATCCAAATATCAACAGGTTTTTCAAGCATTACCTGCTGCTTGTTTTAATCAGTCAAATGGCGTCTGGACTCTTTCGTCTTCTTGCAGCACTTGGGAGGGAAATGGTTGTTGCCGATACATTTGGGTCTTTTGCACAGCTCGTGCTTTTGATTCTCGGTGGATTTCTTATTTCACGAGAAAACATTAAGAAATGGTGGATATGGGGTTACTGGTCCTCTCCGTTGATGTATGCACAGAATGCAATTGCAGTAAATGAATTTCTTGGGCATAGTTGGAATAAGCATGTACCTGGATCGAATGATACTCTCGGAGTTCAGATCTTGAAGTTGCGCGGGATCTTTGTTGATGCTAACTGGTATTGGATAGGCGTAGGGGCACTTCTTGGATACATCTTCCTGTTTAATGTCCTATTTGTTTTCTTTCTGGACTGGCTTGATCCACTTGGCAAAGGTCAAGCAACTATTTCTGAAGAGACATTGAGAGAGAAGCAAGCTAATAGAACAGGTGCAAGAATCGAAATGACCTCAAATGGTGAATTATTTCCATCAAATGTTGATTCTTCAAAGCCTACAGGGGAAGAAAGGATTTCTAAAGAAAAGGAAAAGCACGGAATGGTGCTCCCATTTGCCCCACTTTCAATCACTTTTGACAATGTTAGATATTCTGTGGAAATGCCCCAGGAAATGAGAGACAAAGGGATACTTGAGGACCGTTTGGTCCTTCTAAAAGGTGTTAGCGGAGCATTCAGACCAGGGGTACTCACAGCTCTGATGGGTGTAAGCGGAGCGGGCAAGACAACTCTAATGGATGTTTTAGCAGGAAGAAAGACTGGCGGTTTTATAGATGGAGATATCCGTATCTCAGGATATCCCAAAAAGCAAGAGACATTTGCTAGGATTTCTGGCTATTGTGAGCAGAATGACATCCACTCTCCGCACGTTACCGTTTATGAATCACTCCTTTACTCGGCCTGGCTACGCCTGCCTCATGATGTTGATGCTGCAGCAAGAAAGATGTTCATTGAGGAGGTCATGGAACTAGTGGAGCTGGACATACTAAGGGGAGCGCTTGTAGGATTGCCCGGGGTGAATGGCCTATCAACCGAGCAGCGAAAGAGACTGACGATTGCAGTAGAACTTGTTGCCAACCCCTCAATAATCTTCATGGATGAGCCAACCTCCGGGCTTGATGCTAGAGCTGCAGCCATTGTGATGAGAACCGTAAGGAACACTGTGGACACCGGCAGGACTGTGGTGTGCACAATACACCAACCGAGCATCGATATCTTTGAAGCTTTTGATGAGCTTTTCCTGATGAAACGAGGTGGAGAAGAGATCTATGTTGGCCCATTGGGCCGGAATTCTTGCCATCTGATCAAGTACTTTGAGGATGTCGAAGGAGTCAGGAAGATTAAAGATGGCTACAACCCGGCAACATGGATGCTGGAAGTTACAACCCAGGCGCAGGAGGAAATTCTCGGTGTCGATTTTTCTGAAAATTACAAGAATTCTGACCTGTACAGAAGGAACAAAGCTTTGATCAGTGAACTAAGCACTCCCCCTCCTGGCTCAACAGACCTTTTCTTTCCAACCCAATATTCTCAAGGCTTTTTGACTCAGTGCAATGCCTGCCTATGGAAGCAACACAAGTCTTATTGGCGCAATCCATCTTACACAGCCACTAGAATCTTCTTCACCTCTGTCATTGCTCTGATATTCGGAACCATTTTCTGGAAACTCGGCACAAATGTGAGCACTCAACAAGGCCTGTTCAACTCCCTCGGCTCAATGTACGCAGCCGTGCTTTTCATTGGAATACAGAACGGGCAAACGGTGCAGCCGATTGTGGATGTTGAACGCACGGTTTTCTACAGGGAAAAGGCTGCGGGAATGTATTCTGCGCTCCCCTACGCTTTTGCACAGGTCCTGATCGAGATCCCGCACATTTTTCTTCAGACTGTTATTTACGGGCTGATAGTTTACAGCTGCATCTCTTTCCACTGGACCGTGGTGAAGTTCCTCTGGTATTTGTTCTTCATGTTCATGACCTTCCTCTACTTCACATTTTACGGAATGATGGCCGTTGCCATGACTCCAAACAGCGACATTGCCGCCATAGTCTCCACCGCATTCTATGCGATATGGAACATCTTCGCGGGCTATCTTATACCTCGGCCAAGGATCCCAGTGTGGTGGAGATGGTACTCGTGGGCATGCCCGGTCGCTTGGACTCTGTATGGGTTGGTGGCCTCGCAGTTTGGAGACTACAAGACTATGATGGAGGACAGCGAGGTTACGGTGCAGGAGTTTATTAAGGAGTATTTTGGGTTCAGGCACGACTTCTTGGGAGCTGTGGCTGCGGCCATGGTTGCGTTTGCTGTGCTCTTTGCGTTTGTCTTTGCGTTCTCAATCAGAGTTTTCAACTTCCAACGAAGATAGAAAGAAGGAAATGCTGTCCCTTTTCAGATGCAGCCCGAGTTGTAAATTATTTTCTCCTGTATAGGTAGGCCTTCAAAATGTATTTGTATCACCCTTAATGTTATTTTTTTTTGTCAAATAGGCACAGAGCACGTGTTCTTGTGATCAGCAATTGTACAACATATTTGTTTATTACACTTTTTTATTATTGAAGTAGGGAAGCTGAGATATATTGACCTTTGAAATATGGAACTGCAATTTCCATTGAAGTGCTTCACTGCAAAAGCAGCAAAAGCAGCCAAAGCAGCCAAAGCAACATTTTCTTTGATTGTAATCTGATTGATATTTCAGCTTCGAGCAAACTATAGTGATTCATCAGCTCTATGTAACAGTAGTCTTGCAATTTTTTTGTAGTTTTCTGTAATTATATTCTTAAATATTCTTTTATTGTACTTTTTTTTATAGTTCACAATCAGTTATGTACATCTACTTTTTCATCTATCAAGCTAGGTTTTTTCGACATCTTACTGTGCTATGTAGCCTTGTTTAACATACCATAGTAAGATGTTTTGTACATGAAAACTGTTATAGTACTCTCAAATATACTTGCTTTAAT

Network for GWHGAAEX018848

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	93	144	6.40E-09
PF00005.26	ABC_tran	169	350	7.20E-15
PF01061.23	ABC2_membrane	504	716	1.40E-44
PF08370.10	PDR_assoc	721	784	3.60E-26
PF00005.26	ABC_tran	871	1023	1.50E-18
PF01061.23	ABC2_membrane	1168	1382	8.80E-57

Protein Sequence

>GWHPAAEX018848
MEGSLRMSSIRGSMRSVSRSASAWRTTSAAFGRSIQEEDDEEALRWAALEKLPTYHRMRKGIMTGAGGAQEVDVQWLGIQERKNLLEKLVRTAEEDNEKFLLKLRDRMERVGIDNPSIEVRFTHLNIDAEAYVGNRGIPTFSNFFMNKIAGLLSSMHIVPSGKRPISILSDISGIIRPCRMTLLLGPPGSGKTTLLLSLAGKLDSTLKVSGEVTYNGHHMDEFVPQRTSAYISQHDIHIGEMTVRETLSFSSRCQGVGTRYDMLTELSRREKEANIKPDAEIDVYMKAISVEGQENVVTDYILKILGLEVCADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILEGTAVISLLQPAPETYELFDDIILLSEGQIVYQGPREHVLEFFELMGFKCPERKGVADFLQEVTSRKDQQQYWAEKDEPYTYVSVNEFAKAFQSFHVGLKLGTELDAPFDRTRNHPAALTTSKYGICKMELLKVCTSREWLLMKRNSFVYIFKVVQLIILGLIAMTVFFRTKMHRNGIEDGVIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWILKIPISFLECAVWICITYYVIGFDPNINRFFKHYLLLVLISQMASGLFRLLAALGREMVVADTFGSFAQLVLLILGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKHVPGSNDTLGVQILKLRGIFVDANWYWIGVGALLGYIFLFNVLFVFFLDWLDPLGKGQATISEETLREKQANRTGARIEMTSNGELFPSNVDSSKPTGEERISKEKEKHGMVLPFAPLSITFDNVRYSVEMPQEMRDKGILEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGFIDGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPHDVDAAARKMFIEEVMELVELDILRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRNSCHLIKYFEDVEGVRKIKDGYNPATWMLEVTTQAQEEILGVDFSENYKNSDLYRRNKALISELSTPPPGSTDLFFPTQYSQGFLTQCNACLWKQHKSYWRNPSYTATRIFFTSVIALIFGTIFWKLGTNVSTQQGLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVIYGLIVYSCISFHWTVVKFLWYLFFMFMTFLYFTFYGMMAVAMTPNSDIAAIVSTAFYAIWNIFAGYLIPRPRIPVWWRWYSWACPVAWTLYGLVASQFGDYKTMMEDSEVTVQEFIKEYFGFRHDFLGAVAAAMVAFAVLFAFVFAFSIRVFNFQRR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.610
SRP064423	SRR2545915	Juvenile tuber	23.930
SRP108465	SRR5643513	five period of Gastrodia elata	20.830
	SRR5643514	five period of Gastrodia elata	12.160
	SRR5643515	five period of Gastrodia elata	50.030
	SRR5643524	five period of Gastrodia elata	19.590
	SRR5643525	five period of Gastrodia elata	25.130
	SRR5643528	five period of Gastrodia elata	21.050
	SRR5643658	five period of Gastrodia elata	12.310
	SRR5643659	five period of Gastrodia elata	27.260
	SRR5643660	five period of Gastrodia elata	12.470
	SRR5643661	five period of Gastrodia elata	26.830
	SRR5643662	five period of Gastrodia elata	37.090
	SRR5643663	five period of Gastrodia elata	30.550
	SRR5643664	five period of Gastrodia elata	47.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.000
SRP279888	Gastro	Gastrodia elata tuber	19.37
	Juven	Juvenile tuber	8.92
	Mother_Gastro	Mother tuber of Gastrodia elata	137.61
	Mother_Juven	Mother tuber of Juvenile	235.66