Gene detail

Detail information of GWHGAAEX018849/evm.TU.scaffold_99.59

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|313677819\|ref\|YP_004055815.1\|	4.00E-30	ABC transporter [Marivirga tractuosa DSM 4126]
KOG	KOG0065	6.00E-171	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|474420790\|gb\|EMS67534.1\|	0	Pleiotropic drug resistance protein 4 [Triticum urartu]
Swissprot	tr\|Q8GU87\|PDR6_ORYSJ	8.00E-180	Pleiotropic drug resistance protein 6
trEMBL	tr\|M8B1Y6\|M8B1Y6_TRIUA	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:TRIUR3_34762-P1}
trEMBL	tr\|M8B1Y6\|M8B1Y6_TRIUA	3.00E-19	Uncharacterized protein {ECO:0000313\|EnsemblPlants:TRIUR3_34762-P1}
TAIR	AT4G15230	6.00E-171	pleiotropic drug resistance 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	931182	933775	-

Transcript Sequence
>GWHTAAEX018849 ATGGAAAGGGTGCTCCCATTCATCCCACTTTCAGTAACATTTGAAAATATAAAGTATTCGGTGGATTTGCCACAGGATATAAAAGCAAAGGACATTGAAGAAAACAAGTTAATTCTTTTAAAGGGTTTAAGTGGCAGCTTTAAACCTGGGGTTCTTACAGCTCTCATGGGCGTTAGTGGAGCTGGAAAGACTACACTTATGGATGTACTTGCAGGAAGAAAAACTGGTGGATACGTTGAAGGAAAAATAACCATATCTGGATATCCTAAGAAGCAAGAAACTTTTTCTCGTGTAACTGGATACTGTGAACAGAATGATATACACTCTCCAAATCTAACCGTTTATGAATCACTTGTTTTCTCAGCATGGCTTCGTCTTCCTGCTTACATGGATACTATGAAACGAAGATTGTTCATTGAAGAAGTCATGGATCTCACAGAGATGATGCACCTAAAAGAAGCTTTGGTGGGATTGCCTGGAGTAAATGGGTTATCAACTGAACAACGCAAGAGACTTACCATAGCAGTTGAGCTTGTTGCTAATCCTTCAATAATTTTCATGGATGAGCCTACCTCAGGTTTGGATGCTAGAGCTGCAGCTGTTGTAATGAGAGCTGTGAGAAATACAGTTAATGAAGGTAGGACTATAGTGTGTACACTTCATCAACCTAGTATTGATATATTTGAAGCTTTTGATGAGTTATTCTTAATGAGGAGGGGAGGAGAAGAAATATATGTTGGCCCACTAGGTCATCAATCATGTCACCTGATTAAGTACTTTGAGGATATTCAAGGAGTTCCTATGATTATAGAAGGCCAAAATCCTGCAACATGGATGATGAACGTGACCTCTCAAACACAAGAAGTAGCATTGGGCATAGATTTCAACAAAGATTATAGAAACTCACAATTGTATCATAATAAACGACAAGATTTGCTTAATGCCATGGGTTCTATGTATGGTGGTATTTTCTTTATTGGAATCATTTATTGTACTGGTATTGTTCCCATTGTGGCCATTGAGCGCACTGTCGTATATAGGGAAAGAGCGGCAGGGATGTACTCAGCATTTCCATTTGCCTTTGGACAAGTTATGATTGAGCAACCATATGTTATGGTTCAGTCTCTTATGTACGGGATTATTGTGTATATCATGATTGGATTTGAATGGACATTATCTAAGTTCTTTTTGTACATCTTCTTCACATACCTTGCACTATTACAATTCACATATTTTGGCATGCTAACTGTTGGAATGACTCCTAACATCAACATAGCCTCCCTTGTTGTTTCTGGTGTTGTTGGAGTATGGAATCTATTTTCAGGATTTACCATCCCAGCAACGGGAATTCCTATTTGGTGGAGATGGTTTTATTGGGCATGTCCTATTTCATGGACTCTCTGTGGATTACTCGTATCCCAATATGGAGATATTGAAACAAAGCTTGATGAAACTCAGACGGTGGCAGATTTTTTAAGGAGCTACTTTGGATACAATAAAGACTTTTTAGGAGTAGTAGGATTTGTGGCTATATTTTTTTCTATTTTCCTTGCTGTTTTATTTGCGCTAGCAATAAATTTTCTGCATTTTCACAAAAAGTGA

Network for GWHGAAEX018849

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	40	192	4.20E-21
PF01061.23	ABC2_membrane	295	474	1.10E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.170
SRP108465	SRR5643513	five period of Gastrodia elata	5.480
	SRR5643514	five period of Gastrodia elata	5.910
	SRR5643515	five period of Gastrodia elata	6.010
	SRR5643524	five period of Gastrodia elata	6.400
	SRR5643525	five period of Gastrodia elata	3.580
	SRR5643528	five period of Gastrodia elata	2.510
	SRR5643658	five period of Gastrodia elata	2.080
	SRR5643659	five period of Gastrodia elata	0.170
	SRR5643660	five period of Gastrodia elata	10.980
	SRR5643661	five period of Gastrodia elata	7.640
	SRR5643662	five period of Gastrodia elata	0.140
	SRR5643663	five period of Gastrodia elata	0.070
	SRR5643664	five period of Gastrodia elata	0.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.300
SRP279888	Gastro	Gastrodia elata tuber	17.83
	Juven	Juvenile tuber	13.37
	Mother_Gastro	Mother tuber of Gastrodia elata	5.42
	Mother_Juven	Mother tuber of Juvenile	10.99