Gene detail

Detail information of GWHGAAEX018852/evm.TU.scaffold_99.62

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434396692\|ref\|YP_007130696.1\|	4.00E-33	FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits [Stanieria cyanosphaera PCC 7437]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|719994699\|ref\|XP_010254256.1\|	0	PREDICTED: pleiotropic drug resistance protein 1-like [Nelumbo nucifera]
Swissprot	tr\|Q8GU89\|PDR4_ORYSJ	0	Pleiotropic drug resistance protein 4
trEMBL	tr\|M0TWK6\|M0TWK6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P01490_001}
trEMBL	tr\|M0TWK6\|M0TWK6_MUSAM	6.00E-84	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P01490_001}
TAIR	AT1G15520	0	pleiotropic drug resistance 12

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	936394	967465	-

Transcript Sequence
>GWHTAAEX018852 ATGCACTATCTTCGAATAAATCTGAGCAAGAAGAGACCATTCACCATTCTTAATGACATCAGTGGAATCATCAAGCCCGGCAGGTTGACGCTGCTTCTCGGCCCTCCAGGTTCTGGAAAGACTTCTCTGCTATTAGCTCTTGCAGGAAAGCTTTCCCCCGATCTAAAGGTGTCTGGACAAGTGACATACAACGGTCATACGTTGGAAGAGTTTGTGCCGCAGCGAACAGCAGCTTATATAGGCCAGCATGACCTTCATATGGGAGAGATGACAGTGAGGGAAACAATCGCCTTCTCTGCAAGATGTCAAGGAGTTGGCTCTCGCTATGACATGTTAATGGAGCTTCTTAGAAGGGAAAAGTCGGCAAATATCAAGCCTGACCCTGATATAGATTTCTTCATGAAGGCATCATCATTAGAAGGGAAAGAAACAGGAGTGATCACAGATTACACAATGAAGATTTTAGGATTGGATATCTGCGCTGATATCTTCGTAGGAGATGCAATGTTAAGGGGTATCTCCGGAGGACAAAAGAGGCGACTCACTACAGGCGAGATGATAGTTGGGCCAGCTCAGGCATTATTCATGGACGAAATATCCACCGGTCTCGACAGTTCTACAACTTTCCAGATTGTAAAATCCACAAGGCAAATTAATCATATTCTTGGAGGGACTGCAGTGCTTTCTCTGCTTCAGCCCGCCCCTGAGACATACGAGCTCTTTGACGATATCATCATTCTCTCAGATGGCCAGATTGTGTTTCAAGGAGCTCGTGAATATGCGCTGGAATTTTTCAACTTTATGGGCTTCAAATGTCCGCAGAGGAAGGGCGTTGCAGATTTCTTACAAGAAATTATTTCTCGGAAAGATCAGCACCAATATTGGGCACGACACGATAAACCATACAAATATGTCTCTACACAAAATTTTATAGAAGGATTCAAGACTTTCAGTGAAGGAAAGAAACTTGGAAGAGAACTGTCTGTTCCATTTGACAAGGCCAAGAGCCACCCTGCCGCCCTAACTACCAAAAAATATGGTGCAAAAAAATTGGAACTATTAAAGGCTTGTTCTGAAAGGGAATTTCTGCTAATGAAGAGGAACTCATATGTGTACATCTTTCGAATATTTAGGATGTTGGTCATGTCTATCATCATGATGACATTATTTCTAAGGACGACAATGCACCATCAATCCATACATGATGGTTGGATTTACATAGGATCCTTCTATTTCTCAACAGTAATTATTTTGCTCAATGGCTACTCAGAGCTTTCCTTTACTCTCACGAAGCTGCCTGTTATTATCAAGCAAAGGGATTGTCACTTCTACCCCTCTTGGGTATATGCAATACCAGCTTGGGTTATAAAAGCTCCATTTTTATACATAGAGGTATCTATTTGGGTGATTTTAAATTACTACATCATAGGATATGATCCGAGTCTCGTAAGGTTCTTCAAGCATTATCTATTTCTTCTTCTAGTGAATCAAATGTCTTCAGGATTATTTCGCTTCATAGGGGTTATTGGAAGATCTATGACTGTAGGCAGTGCATTCGCACTCAGCATAATCCTCTTCTCCTTCCTATTGAGTGGATTTGTCATTGAACATAGAGAAATGAAAAAATACATTTCTTGGGGATACTGGATATCACCATTAATGTATTCACAAAATGCCCTTTCAGTAAATGAGTTCCTTGGAAAAAGTTGGAGTCAGATTTTACCTGATTCAAATCAAACTCTGGGTGTCAGCATCTTAAAATCGCGGGATATGTTATTCGAAGAAAAGTGGTATTGGATTGGCATTGCAGTTTTAATTGGATATGTGGTTCTATTCAACCTTCTTTTCACTGTGGCTCTATCCTATATTAAATCATCCAGGAAAGTTCAACTAGCGATATCTAGAGAAATTTTCATGGGGAGAGAAACAAATGAAAATAAGCTAATTTCATATGGAGATAAGAAAACGTCAATGTACAATTCTGAAAGTGATAGCTCAAATGAAAAAAAGAAAACGGTGCTCCATTTTATACCACTTCCAGTAACATTTGAAAATATAAAGTATTCAGTGGACCTACCAATGGGAATGAAATCACAAGGAATTGAAGAAAACAGGTTAACGCTTTTAAAGGGTGTAAGTGGTTGCTTTAGACCTGGGGTGCTTACCGCTCTCATGGGTGTTAGTGGAGCTGGAAAAACTACACTTATGGATGTACTTGCAGGAAGAAAAACTGGAGGATACATCGAAGGAAAAATCACCATATCTGGCTACCCTAAGAAGCAAGAAACTTTTTCTCGTGTAACTGGATACTGTGAACAGAATGATATACACTCTCCAAATCTAACAGTTTATGAATCTCTTGTTTTCTCAGCATGGCTTCGTCTTCCACCTGACGTCAATAATCTGAAACGAAAAATGTTTATTGAAGAAGTCATGGAGCTCATAGAGCTGATACAATTAAAAGAAGCATTGGTCGGGTTGCCTGGTGTAAATGGACTATCAACTGAACAACGCAAGAGGCTTACCATAGCTGTTGAACTTGTTGCTAATCCTTCAATAATTTTCATGGACGAGCCTACCTCAGGACTGGATGCTAGAGCTGCAGCTGTTGTAATGAGAGTTGTGAGAAATACAGTCAATAACGGTAGGACGGTAGTGTGTACAATTCATCAGCCTAGCACTGATATATTTGAAGCTTTCGATGAGTTATATTTGATGAGGAGAGGAGGAGAAGAAATATATATTGGACCACTAGGGCATCAATCTTGTCATCTTATTAAGTATTTTGAGGATATTCAAGGAGTTCCAAAGATTAAACAAGGCTATAATCCTGCAACATGGATGATGGAAGTGACTTCTCAAGCGCAAGAAATAGCATTGGGCATAAATTTCAACGAAGTTTATAGGAACTCGCAATTGTATCAGAGAAATGCAGAAATGATTGCCATATTAAGCAAACCAACTTCTGGCTCATGTGATCTCTATTTTCCAACGAAATATTCGCAATCCTTCATCACTCAATGCATTGCTTGCCTATGGAAACAACAATTATCGTATTGGAGGAATTCCTCATATGTTGTAGTGAGGTTTTTATACACTTTAACGTTGACATTGATGTTTGGGATATTTTTCTGGGATCTTGGCCATAAAAGAGACAAACAACAAGACTTGCTTAATGCCATGGGCTCCATGTATGGTGCTACTTTTTATAATGGAGTCTATTATTGTAGTAGTGTTATATCTGTTGTAGCTATCGAGCGCTCTGTAGTGTATAGGGAGAGAGCAGCAGGAATGTACTCAGCTTTTCCATATGCCTTTGGACAAGTCATGATTGAACAACCCTATATCATGGTCCAATCTCTTGTATCTGGAATTATTGTTTATACCATGATTGGATTTGAATGGACATTATCTAAGTTCTTATTATACATGTTCTTCACATACTTCACATTATTGTACTTCACATACTTTGGCATGCTAACTATTGGCATAACTCCTAGCGTTAACATAGCCTCCATAGTTGTTTCTGCCAATTATGGATTGTGGAATCTATTTTCAGGATTTATCATTCCAGCCTCGGAAATTCCTATTTGGTGGAGATGGTATTATTGGACATGTCCTATGTCATGGACTCTATATGGATTGCTTGTATCGCAATATGGAGATGTTGAAACAAAGCTTGATGAAACTCAAACTGTTGCAGAATTTTTAAAGATTTGCATGTATGAGAATGGTAATGACGGCCTTATTGAAGTTGAACTTCTGTATGTGTACTTCAATTACATAGTTGGAATCGATTTGCCGACCATCGAAGTGCGGTTCCAGAATCTTAGCATTGAGGCTGAAGCTTATGTGGTCAGCAGAGGGCTGCCATCCCTCTTCAATACAATTCTCAATGCAATGGAGTCCTTTGCGCACTATCTTCGAATAACTCCGAGCAAGAAGAGACCATTCACCATTCTTAATGACATCAGTGGAATCATCAAGCCCGGCAGGTTGACGCTGCTTCTCGGCCCTCCAGGTTCTGGAAAGACTTCTCTGCTATTAGCTCTTGCAGGAAAGCTTTCCCCCGATCTAAAGGTGTCTGGACAAGTGACATACAACGGTCATACGTTGGAAGAGTTTGTGCCGCAGCGAACAGCAGCTTATATAGGCCAGCATGACCTTCATATGGGAGAGATGACAGTGAGGGAAACAATCGCCTTCTCTGCAAGATGTCAAGGAGTTGGCTCTCGCTATGACATGTTAATGGAGCTTCTTAGAAGGGAGAAGGAAGCAAATATCAAGCCTGATCCTGATGTAGACTTCTTCATGAAAGCATCATCATTAGATGGGAAAGACACAGAAGTGATCACAAATTACACAATGAAGGAAATGCAACGTTAA

Network for GWHGAAEX018852

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	17	199	6.90E-14
PF01061.23	ABC2_membrane	353	565	2.00E-35
PF08370.10	PDR_assoc	570	631	4.90E-24
PF00005.26	ABC_tran	709	861	2.20E-20
PF01061.23	ABC2_membrane	1006	1220	3.20E-49
PF00005.26	ABC_tran	1321	1423	6.90E-10

Protein Sequence

>GWHPAAEX018852
MHYLRINLSKKRPFTILNDISGIIKPGRLTLLLGPPGSGKTSLLLALAGKLSPDLKVSGQVTYNGHTLEEFVPQRTAAYIGQHDLHMGEMTVRETIAFSARCQGVGSRYDMLMELLRREKSANIKPDPDIDFFMKASSLEGKETGVITDYTMKILGLDICADIFVGDAMLRGISGGQKRRLTTGEMIVGPAQALFMDEISTGLDSSTTFQIVKSTRQINHILGGTAVLSLLQPAPETYELFDDIIILSDGQIVFQGAREYALEFFNFMGFKCPQRKGVADFLQEIISRKDQHQYWARHDKPYKYVSTQNFIEGFKTFSEGKKLGRELSVPFDKAKSHPAALTTKKYGAKKLELLKACSEREFLLMKRNSYVYIFRIFRMLVMSIIMMTLFLRTTMHHQSIHDGWIYIGSFYFSTVIILLNGYSELSFTLTKLPVIIKQRDCHFYPSWVYAIPAWVIKAPFLYIEVSIWVILNYYIIGYDPSLVRFFKHYLFLLLVNQMSSGLFRFIGVIGRSMTVGSAFALSIILFSFLLSGFVIEHREMKKYISWGYWISPLMYSQNALSVNEFLGKSWSQILPDSNQTLGVSILKSRDMLFEEKWYWIGIAVLIGYVVLFNLLFTVALSYIKSSRKVQLAISREIFMGRETNENKLISYGDKKTSMYNSESDSSNEKKKTVLHFIPLPVTFENIKYSVDLPMGMKSQGIEENRLTLLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGKITISGYPKKQETFSRVTGYCEQNDIHSPNLTVYESLVFSAWLRLPPDVNNLKRKMFIEEVMELIELIQLKEALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRVVRNTVNNGRTVVCTIHQPSTDIFEAFDELYLMRRGGEEIYIGPLGHQSCHLIKYFEDIQGVPKIKQGYNPATWMMEVTSQAQEIALGINFNEVYRNSQLYQRNAEMIAILSKPTSGSCDLYFPTKYSQSFITQCIACLWKQQLSYWRNSSYVVVRFLYTLTLTLMFGIFFWDLGHKRDKQQDLLNAMGSMYGATFYNGVYYCSSVISVVAIERSVVYRERAAGMYSAFPYAFGQVMIEQPYIMVQSLVSGIIVYTMIGFEWTLSKFLLYMFFTYFTLLYFTYFGMLTIGITPSVNIASIVVSANYGLWNLFSGFIIPASEIPIWWRWYYWTCPMSWTLYGLLVSQYGDVETKLDETQTVAEFLKICMYENGNDGLIEVELLYVYFNYIVGIDLPTIEVRFQNLSIEAEAYVVSRGLPSLFNTILNAMESFAHYLRITPSKKRPFTILNDISGIIKPGRLTLLLGPPGSGKTSLLLALAGKLSPDLKVSGQVTYNGHTLEEFVPQRTAAYIGQHDLHMGEMTVRETIAFSARCQGVGSRYDMLMELLRREKEANIKPDPDVDFFMKASSLDGKDTEVITNYTMKEMQR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.960
SRP064423	SRR2545915	Juvenile tuber	2.270
SRP108465	SRR5643513	five period of Gastrodia elata	6.890
	SRR5643514	five period of Gastrodia elata	6.140
	SRR5643515	five period of Gastrodia elata	5.660
	SRR5643524	five period of Gastrodia elata	5.630
	SRR5643525	five period of Gastrodia elata	1.670
	SRR5643528	five period of Gastrodia elata	2.960
	SRR5643658	five period of Gastrodia elata	1.640
	SRR5643659	five period of Gastrodia elata	1.320
	SRR5643660	five period of Gastrodia elata	8.510
	SRR5643661	five period of Gastrodia elata	6.000
	SRR5643662	five period of Gastrodia elata	0.790
	SRR5643663	five period of Gastrodia elata	0.990
	SRR5643664	five period of Gastrodia elata	0.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.280
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.930
SRP279888	Gastro	Gastrodia elata tuber	14.24
	Juven	Juvenile tuber	12.47
	Mother_Gastro	Mother tuber of Gastrodia elata	5.38
	Mother_Juven	Mother tuber of Juvenile	9.78