Detail information of GWHGAAEX018855/evm.TU.scaffold_99.65


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17576.00E-74Histone 2A
nrgi|719994842|ref|XP_010254303.1|8.06E-83PREDICTED: probable histone H2A variant 3 [Nelumbo nucifera]
Swissprottr|Q9C944|H2AV3_ARATH2.00E-74Probable histone H2A variant 3
trEMBLtr|D7SUM0|D7SUM0_VITVI2.00E-82Histone H2A {ECO:0000256|RuleBase:RU003556}
TAIRAT1G527406.00E-74histone H2A protein 9

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009810245271049113-
Transcript Sequence

Network for GWHGAAEX018855

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone161029.70E-20
PF16211.4Histone_H2A_C1031329.20E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0005634Cellular Componentnucleus
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms64.980
SRR2545915Juvenile tuber64.220
SRP108465SRR5643513five period of Gastrodia elata186.060
SRR5643514five period of Gastrodia elata201.580
SRR5643515five period of Gastrodia elata166.550
SRR5643524five period of Gastrodia elata199.830
SRR5643525five period of Gastrodia elata252.630
SRR5643528five period of Gastrodia elata269.480
SRR5643658five period of Gastrodia elata224.740
SRR5643659five period of Gastrodia elata140.010
SRR5643660five period of Gastrodia elata127.700
SRR5643661five period of Gastrodia elata157.570
SRR5643662five period of Gastrodia elata108.760
SRR5643663five period of Gastrodia elata116.090
SRR5643664five period of Gastrodia elata112.490
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1142.590
SRR6049655Rhizomagastrodiae_C368-T10_good_1252.970
SRR6049656Rhizomagastrodiae_C368-T07_good_1181.030
SRR6049657Rhizomagastrodiae_C368-T07_good_1122.450
SRR6049658Rhizomagastrodiae_C368-T04_good_1148.440
SRR6049659Rhizomagastrodiae_C368-T04_good_1113.960
SRR6049660Rhizomagastrodiae_C368-T01_good_1157.010
SRR6049661Rhizomagastrodiae_C368-T04_good_1143.030
SRR6049662Rhizomagastrodiae_C368-T01_good_1209.630
SRR6049663Rhizomagastrodiae_C368-T01_good_1183.320
SRR6049664Rhizomagastrodiae_C368-T10_good_1245.830
SRR6049665Rhizomagastrodiae_C368-T10_good_1245.830
SRP279888GastroGastrodia elata tuber 120.78
JuvenJuvenile tuber144.29
Mother_GastroMother tuber of Gastrodia elata 187.91
Mother_JuvenMother tuber of Juvenile 169.66