Detail information of GWHGAAEX018857/evm.TU.scaffold_99.67
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|113478270|ref|YP_724331.1| | 5.00E-45 | cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101] |
| KOG | KOG0498 | 0 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain |
| nr | gi|672113160|ref|XP_008809499.1| | 0 | PREDICTED: potassium channel AKT1-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q0JKV1|AKT1_ORYSJ | 0 | Potassium channel AKT1 |
| trEMBL | tr|A3RG92|A3RG92_LILLO | 0 | AKT1-like K+ channel LilKT1 {ECO:0000313|EMBL:ABO15470.1} |
| TAIR | AT2G26650 | 0 | K+ transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 1082885 | 1122850 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018857
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00520.30 | Ion_trans | 62 | 306 | 7.60E-37 |
| PF00027.28 | cNMP_binding | 399 | 484 | 9.80E-14 |
| PF12796.6 | Ank_2 | 529 | 618 | 2.40E-12 |
| PF12796.6 | Ank_2 | 629 | 715 | 6.10E-13 |
| PF11834.7 | KHA | 831 | 893 | 1.20E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006811 | Biological Process | ion transport |
| GO:0006813 | Biological Process | potassium ion transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005216 | Molecular Function | ion channel activity |
| GO:0005249 | Molecular Function | voltage-gated potassium channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.090 |
| SRR2545915 | Juvenile tuber | 11.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.340 |
| SRR5643514 | five period of Gastrodia elata | 35.900 | |
| SRR5643515 | five period of Gastrodia elata | 22.490 | |
| SRR5643524 | five period of Gastrodia elata | 34.710 | |
| SRR5643525 | five period of Gastrodia elata | 23.940 | |
| SRR5643528 | five period of Gastrodia elata | 29.840 | |
| SRR5643658 | five period of Gastrodia elata | 32.780 | |
| SRR5643659 | five period of Gastrodia elata | 14.580 | |
| SRR5643660 | five period of Gastrodia elata | 8.780 | |
| SRR5643661 | five period of Gastrodia elata | 9.610 | |
| SRR5643662 | five period of Gastrodia elata | 14.490 | |
| SRR5643663 | five period of Gastrodia elata | 13.860 | |
| SRR5643664 | five period of Gastrodia elata | 12.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.48 |
| Juven | Juvenile tuber | 8.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 48.48 | |
| Mother_Juven | Mother tuber of Juvenile | 31.54 |