Detail information of GWHGAAEX018865/evm.TU.scaffold_99.77
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302337379|ref|YP_003802585.1| | 3.00E-51 | ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293] |
| KOG | KOG0353 | 3.00E-126 | ATP-dependent DNA helicase |
| nr | gi|672172280|ref|XP_008806228.1| | 1.07E-142 | PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FT73|MED34_ARATH | 3.00E-127 | Mediator of RNA polymerase II transcription subunit 34 |
| trEMBL | tr|M5WAB0|M5WAB0_PRUPE | 1.00E-139 | Uncharacterized protein {ECO:0000313|EMBL:EMJ10659.1} |
| TAIR | AT1G31360 | 3.00E-126 | RECQ helicase L2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 1374278 | 1398602 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018865
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 90 | 233 | 7.80E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006310 | Biological Process | DNA recombination |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004386 | Molecular Function | helicase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.030 |
| SRR2545915 | Juvenile tuber | 7.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.350 |
| SRR5643514 | five period of Gastrodia elata | 9.130 | |
| SRR5643515 | five period of Gastrodia elata | 9.360 | |
| SRR5643524 | five period of Gastrodia elata | 8.040 | |
| SRR5643525 | five period of Gastrodia elata | 2.380 | |
| SRR5643528 | five period of Gastrodia elata | 1.450 | |
| SRR5643658 | five period of Gastrodia elata | 2.690 | |
| SRR5643659 | five period of Gastrodia elata | 5.940 | |
| SRR5643660 | five period of Gastrodia elata | 5.230 | |
| SRR5643661 | five period of Gastrodia elata | 5.190 | |
| SRR5643662 | five period of Gastrodia elata | 5.030 | |
| SRR5643663 | five period of Gastrodia elata | 5.950 | |
| SRR5643664 | five period of Gastrodia elata | 5.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.92 |
| Juven | Juvenile tuber | 12.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.28 | |
| Mother_Juven | Mother tuber of Juvenile | 9.05 |