Detail information of GWHGAAEX018866/evm.TU.scaffold_99.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|387791080|ref|YP_006256145.1| | 4.00E-55 | ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403] |
| KOG | KOG0353 | 8.00E-170 | ATP-dependent DNA helicase |
| nr | gi|743860195|ref|XP_010942951.1| | 0 | PREDICTED: mediator of RNA polymerase II transcription subunit 34 [Elaeis guineensis] |
| Swissprot | tr|Q9FT73|MED34_ARATH | 0 | Mediator of RNA polymerase II transcription subunit 34 |
| trEMBL | tr|M0SSM1|M0SSM1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P27590_001} |
| TAIR | AT1G31360 | 8.00E-170 | RECQ helicase L2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 1398636 | 1438337 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018866
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00271.30 | Helicase_C | 48 | 144 | 1.80E-15 |
| PF16124.4 | RecQ_Zn_bind | 157 | 213 | 3.00E-12 |
| PF09382.9 | RQC | 221 | 326 | 1.40E-06 |
| PF00570.22 | HRDC | 351 | 411 | 3.80E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0044237 | Biological Process | cellular metabolic process |
| GO:0006281 | Biological Process | DNA repair |
| GO:0006310 | Biological Process | DNA recombination |
| GO:0006260 | Biological Process | DNA replication |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0043138 | Molecular Function | 3'-5' DNA helicase activity |
| GO:0004386 | Molecular Function | helicase activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0000166 | Molecular Function | nucleotide binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.870 |
| SRR2545915 | Juvenile tuber | 9.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.050 |
| SRR5643514 | five period of Gastrodia elata | 12.010 | |
| SRR5643515 | five period of Gastrodia elata | 11.120 | |
| SRR5643524 | five period of Gastrodia elata | 9.460 | |
| SRR5643525 | five period of Gastrodia elata | 3.660 | |
| SRR5643528 | five period of Gastrodia elata | 4.180 | |
| SRR5643658 | five period of Gastrodia elata | 4.060 | |
| SRR5643659 | five period of Gastrodia elata | 10.160 | |
| SRR5643660 | five period of Gastrodia elata | 7.660 | |
| SRR5643661 | five period of Gastrodia elata | 8.310 | |
| SRR5643662 | five period of Gastrodia elata | 9.170 | |
| SRR5643663 | five period of Gastrodia elata | 10.050 | |
| SRR5643664 | five period of Gastrodia elata | 7.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.18 |
| Juven | Juvenile tuber | 9.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.66 | |
| Mother_Juven | Mother tuber of Juvenile | 11.88 |