Detail information of GWHGAAEX018878/evm.TU.scaffold_99.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296133478|ref|YP_003640725.1| | 1.00E-23 | serine/threonine protein kinase [Thermincola potens JR] |
| nr | gi|743825549|ref|XP_010933053.1| | 0 | PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1 [Elaeis guineensis] |
| Swissprot | tr|C0LGF4|FEI1_ARATH | 0 | LRR receptor-like serine/threonine-protein kinase FEI 1 (Precursor) |
| trEMBL | tr|M0SBV7|M0SBV7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P04890_001} |
| TAIR | AT1G31420 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 1557408 | 1584691 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018878
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 26 | 65 | 5.60E-12 |
| PF00069.24 | Pkinase | 308 | 571 | 6.50E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XIIIa |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.530 |
| SRR2545915 | Juvenile tuber | 37.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.760 |
| SRR5643514 | five period of Gastrodia elata | 22.250 | |
| SRR5643515 | five period of Gastrodia elata | 18.610 | |
| SRR5643524 | five period of Gastrodia elata | 20.870 | |
| SRR5643525 | five period of Gastrodia elata | 21.930 | |
| SRR5643528 | five period of Gastrodia elata | 15.630 | |
| SRR5643658 | five period of Gastrodia elata | 24.030 | |
| SRR5643659 | five period of Gastrodia elata | 23.700 | |
| SRR5643660 | five period of Gastrodia elata | 25.730 | |
| SRR5643661 | five period of Gastrodia elata | 25.830 | |
| SRR5643662 | five period of Gastrodia elata | 30.620 | |
| SRR5643663 | five period of Gastrodia elata | 32.580 | |
| SRR5643664 | five period of Gastrodia elata | 35.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.77 |
| Juven | Juvenile tuber | 22.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.76 | |
| Mother_Juven | Mother tuber of Juvenile | 18.21 |