Detail information of GWHGAAEX018885/evm.TU.scaffold_99.97


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-166FOG: PPR repeat
nrgi|672200317|ref|XP_008777847.1|0PREDICTED: pentatricopeptide repeat-containing protein At5g14080 isoform X1 [Phoenix dactylifera]
Swissprottr|Q9FMU2|PP380_ARATH1.00E-171Pentatricopeptide repeat-containing protein At5g14080
trEMBLtr|M0U4I4|M0U4I4_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P29270_001}
TAIRAT5G140802.00E-166Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009816892211693817-
Transcript Sequence

Network for GWHGAAEX018885

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_24024468.70E-16
PF01535.19PPR4715000.15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.010
SRR2545915Juvenile tuber2.860
SRP108465SRR5643513five period of Gastrodia elata7.920
SRR5643514five period of Gastrodia elata6.910
SRR5643515five period of Gastrodia elata6.390
SRR5643524five period of Gastrodia elata6.210
SRR5643525five period of Gastrodia elata3.720
SRR5643528five period of Gastrodia elata3.310
SRR5643658five period of Gastrodia elata1.590
SRR5643659five period of Gastrodia elata7.390
SRR5643660five period of Gastrodia elata7.090
SRR5643661five period of Gastrodia elata8.230
SRR5643662five period of Gastrodia elata6.790
SRR5643663five period of Gastrodia elata7.230
SRR5643664five period of Gastrodia elata5.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.450
SRR6049655Rhizomagastrodiae_C368-T10_good_19.720
SRR6049656Rhizomagastrodiae_C368-T07_good_18.170
SRR6049657Rhizomagastrodiae_C368-T07_good_15.190
SRR6049658Rhizomagastrodiae_C368-T04_good_16.870
SRR6049659Rhizomagastrodiae_C368-T04_good_14.690
SRR6049660Rhizomagastrodiae_C368-T01_good_16.120
SRR6049661Rhizomagastrodiae_C368-T04_good_15.240
SRR6049662Rhizomagastrodiae_C368-T01_good_110.750
SRR6049663Rhizomagastrodiae_C368-T01_good_18.960
SRR6049664Rhizomagastrodiae_C368-T10_good_18.820
SRR6049665Rhizomagastrodiae_C368-T10_good_18.820
SRP279888GastroGastrodia elata tuber 6.08
JuvenJuvenile tuber5.46
Mother_GastroMother tuber of Gastrodia elata 3.40
Mother_JuvenMother tuber of Juvenile 2.80