Detail information of GWHGAAEX018886/evm.TU.scaffold_99.98
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1279 | 8.00E-74 | Chromatin remodeling factor subunit and related transcription factors |
| nr | gi|695058782|ref|XP_009417717.1| | 2.39E-165 | PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8W475|SWI3A_ARATH | 2.00E-98 | SWI/SNF complex subunit SWI3A |
| trEMBL | tr|M0U0T0|M0U0T0_MUSAM | 8.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P16230_001} |
| TAIR | AT2G47620 | 8.00E-74 | SWITCH/sucrose nonfermenting 3A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 1705183 | 1716278 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018886
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04433.16 | SWIRM | 26 | 108 | 2.40E-26 |
| PF00249.30 | Myb_DNA-binding | 241 | 280 | 2.00E-10 |
| PF16495.4 | SWIRM-assoc_1 | 459 | 525 | 1.50E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11649 | SMARCC | Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.130 |
| SRR2545915 | Juvenile tuber | 9.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.830 |
| SRR5643514 | five period of Gastrodia elata | 8.120 | |
| SRR5643515 | five period of Gastrodia elata | 9.690 | |
| SRR5643524 | five period of Gastrodia elata | 9.080 | |
| SRR5643525 | five period of Gastrodia elata | 10.080 | |
| SRR5643528 | five period of Gastrodia elata | 12.630 | |
| SRR5643658 | five period of Gastrodia elata | 10.900 | |
| SRR5643659 | five period of Gastrodia elata | 17.200 | |
| SRR5643660 | five period of Gastrodia elata | 18.100 | |
| SRR5643661 | five period of Gastrodia elata | 17.520 | |
| SRR5643662 | five period of Gastrodia elata | 18.470 | |
| SRR5643663 | five period of Gastrodia elata | 13.260 | |
| SRR5643664 | five period of Gastrodia elata | 17.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.83 |
| Juven | Juvenile tuber | 24.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.48 | |
| Mother_Juven | Mother tuber of Juvenile | 19.37 |