Detail information of GWHGAAEX018887/evm.TU.scaffold_99.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-66 | FOG: PPR repeat |
| nr | gi|743754907|ref|XP_010923418.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Elaeis guineensis] |
| Swissprot | tr|Q9LU94|PP255_ARATH | 8.00E-67 | Putative pentatricopeptide repeat-containing protein At3g25970 |
| trEMBL | tr|M0SMB1|M0SMB1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P08940_001} |
| trEMBL | tr|M0SMB1|M0SMB1_MUSAM | 3.00E-08 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P08940_001} |
| TAIR | AT4G13650 | 4.00E-66 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 1717094 | 1720438 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018887
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 110 | 135 | 7.40E-05 |
| PF01535.19 | PPR | 138 | 168 | 0.012 |
| PF01535.19 | PPR | 213 | 238 | 0.6 |
| PF01535.19 | PPR | 239 | 269 | 0.0017 |
| PF01535.19 | PPR | 410 | 436 | 0.00071 |
| PF01535.19 | PPR | 543 | 564 | 0.0023 |
| PF01535.19 | PPR | 614 | 641 | 0.084 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.750 |
| SRR2545915 | Juvenile tuber | 4.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.080 |
| SRR5643514 | five period of Gastrodia elata | 3.740 | |
| SRR5643515 | five period of Gastrodia elata | 3.850 | |
| SRR5643524 | five period of Gastrodia elata | 2.800 | |
| SRR5643525 | five period of Gastrodia elata | 3.720 | |
| SRR5643528 | five period of Gastrodia elata | 2.730 | |
| SRR5643658 | five period of Gastrodia elata | 1.850 | |
| SRR5643659 | five period of Gastrodia elata | 4.740 | |
| SRR5643660 | five period of Gastrodia elata | 3.450 | |
| SRR5643661 | five period of Gastrodia elata | 4.050 | |
| SRR5643662 | five period of Gastrodia elata | 5.250 | |
| SRR5643663 | five period of Gastrodia elata | 4.590 | |
| SRR5643664 | five period of Gastrodia elata | 7.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.66 |
| Juven | Juvenile tuber | 2.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.06 | |
| Mother_Juven | Mother tuber of Juvenile | 2.17 |