Detail information of GWHGAAEX018888/evm.TU.scaffold_99.100
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|118431929|ref|NP_148704.2| | 3.00E-45 | ABC transporter ATP-binding protein [Aeropyrum pernix K1] |
| KOG | KOG0059 | 0 | Lipid exporter ABCA1 and related proteins, ABC superfamily |
| nr | gi|743755057|ref|XP_010931221.1| | 0 | PREDICTED: ABC transporter A family member 2-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q84K47|AB2A_ARATH | 0 | ABC transporter A family member 2 |
| trEMBL | tr|M0TK74|M0TK74_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23880_001} |
| TAIR | AT3G47730 | 0 | ATP-binding cassette A2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 1730116 | 1737459 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018888
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12698.6 | ABC2_membrane_3 | 220 | 441 | 1.70E-21 |
| PF00005.26 | ABC_tran | 551 | 695 | 9.40E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016887 | Molecular Function | ATPase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.940 |
| SRR2545915 | Juvenile tuber | 2.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.250 |
| SRR5643514 | five period of Gastrodia elata | 3.060 | |
| SRR5643515 | five period of Gastrodia elata | 2.550 | |
| SRR5643524 | five period of Gastrodia elata | 2.840 | |
| SRR5643525 | five period of Gastrodia elata | 10.890 | |
| SRR5643528 | five period of Gastrodia elata | 6.690 | |
| SRR5643658 | five period of Gastrodia elata | 8.610 | |
| SRR5643659 | five period of Gastrodia elata | 1.810 | |
| SRR5643660 | five period of Gastrodia elata | 2.550 | |
| SRR5643661 | five period of Gastrodia elata | 2.080 | |
| SRR5643662 | five period of Gastrodia elata | 3.190 | |
| SRR5643663 | five period of Gastrodia elata | 1.970 | |
| SRR5643664 | five period of Gastrodia elata | 4.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.07 |
| Juven | Juvenile tuber | 6.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.79 | |
| Mother_Juven | Mother tuber of Juvenile | 11.71 |