Gene detail

Detail information of GWHGAAEX018896/evm.TU.scaffold_99.109

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|325110152\|ref\|YP_004271220.1\|	3.00E-38	oligopeptide transporter [Planctomyces brasiliensis DSM 5305]
nr	gi\|695055406\|ref\|XP_009415879.1\|	0	PREDICTED: probable metal-nicotianamine transporter YSL6 isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q7XRV2\|YSL6_ORYSJ	0	Probable metal-nicotianamine transporter YSL6
trEMBL	tr\|A0A0A0LDJ6\|A0A0A0LDJ6_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN58161.1}
TAIR	AT3G27020	0	YELLOW STRIPE like 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	1818606	1872575	+

Transcript Sequence
>GWHTAAEX018896 AAAAATATTATCCACGTTCCCATCCGCACAATCGCCAAAATCACGTTACAAGTTTTTCTTTGCATTTCTTTCTTTCTTGCGCCGGCACAGTAGCAACCCCATTACAAGGTTGATCGCTTCTCAGTCCCAAAGCCCCTGCTCGCCTGCTGACTGGGAGAAGGGGATGAAAACTGAAGAAACGCCGTTTGATATATCGGAGCCACTTTTGCCTGATTCAGGCAAAGACATCGCCGATGAACTTGAGAAGATTTCGCCCTGGGAGGAACAAATAACACTGAGGGGATTGATCGCCAGCGCTTTACTTGGCTGCCTCTTCTGCATTATAACGCAGAAGCTCAGCCTCACCGTCGGAGTAATCCCATCTCTAAACGTCGCTGCCAGTTTGTTGGGATTCTTTTTCGTTCGGAGCTGGGCGGGGATTCTTGAGAACCTCGGCTTCAGTGTCACCCCCGTCACGCGTCAGGAGAACACCGTCATTCAGACTTGCGTGGTCGCTTGCTATGGAGTGGCATCCAGCGGGGGTTTTGGTTCTTACATACTTTCAATGGATCAAAGGACATATGATCTAATAGGAAAGGGTTATCCGGGTAACAGGCCAGAGGATGTTAAAAACCCATCATTGGGATGGATGATAAGTTTCATGTTTGTGGTTAGCTTTTTAGGACTTTTCAGTCTTGTTGCTCTTCGGAAGGTGATGGTCATTGACTACAAGCTTACATACCCTAGTGGAGCGGCCACAGCTTTGTTGATAAATAGTTTTCACACCAACTCTGGAGCTGAGCTTGCAGGGAAACAAGTTCGTTGCCTTGGAAAATACCTCAGCCTGAGCTTCCTGTGGGGTTGCTTTAAGTGGTTCTTCAGCGGTATTGGGAATTCTTGTGGTTTTGATAATTTCCCCATTTTGGGTCTTGCAGCATATAAGAATACTTTCTATTTTGATTTTAGTGCAACATATGTTGGATGTGGTCTTATATGTCCACACATAGTTAATTGTTCAGTTCTTCTTGGAGCCATAATATCTTGGGGATTTCTATGGCCCTTTATCAGTAAGCAAGCTGGAGTTTGGTACCCAGATAACCTTGGAAGCAGTGATTTTAAAGGACTTTATGGTTACAAGGTTTTTGTTGCAATCTCTCTTATACTTGGTGATGGTATCTACAACTTGATTAAAATAATCTATGCAACAATCGATGAAATGTTGCATGCGCGACCAAAGCCTAATGCTCTTCATCGCGTAGCAAGTCAAGATTCGGAGGGATGCAGGCAGCAGCAAGGGGAGGAGGAGAGGGTGAGAAACGCCGTCTTTATGAGAGACGGCATTCCGACCTGGATAGCTGCTTCCGGGTACTTGGGCCTGGCGGTGATATCGACATTGACGATCCCCTTCATCTTCCCCCAGCTGCGGTGGCACTTCGTCTTCCTCTGCTACCTGATTGCCCCCGCCCTCGCCTTCTGCAACTCCTACGGCACTGGCCTCACCGACTGGAACCTCTCCTCGACCTACGGCAAGATCGGCCTCTTCGCCCTCTCCTCCCTCGTCGGCCCCGACGGCGGCGTCATTGCCGGCCTCGCCGCCTGCGGCCTCATGATGTCCGTCGTTTCCTCCGCCGCCGACCTCATGCAGGATTTCAAGACCGGGTACCTCACTCTCTCCTCCCCTCGCTCCATGTTCCTCTCCCAGATCGCCGGCACCGTCATGGGATGCATCATCGCCCCCCTCTCCTTCTGGCTCTTCTGGACCGCCTTCGACGTCGGCTCTCCCGACGGTCCGTACAAGGCCCCCTACGCCGTCATCTACCGCGAGATGGCCATCATCGGCGTCCAGGGATTCTCCGCCCTCCCCAAGCACTGCGCGGAGATCTCCTGCGCCTTCTTCATCGCCGCCCTAGCCCTCAATCTCATCAGGGACTTGGCCCCTGCCCGGGCCTCCGCCTTCGTCCCGATTCCGATGGCCATGGCCGTTCCCTTCTACCTCGGTGCCTATTTTGCCTTAGACATGTTCGTCGGCACTCTGATTCTCTTTGCCTGGAAGAGGCTCAATAAGCGGGAGGCCGAAGACTACGCCGGAGCCGTCGCCTCCGGTCTGATTTGCGGCGAGGGCATCTGGACCGTCCCTTCCGCCGTTCTCTCCATCCTCAGGATTAACCCTCCTATCTGCATGTACTTCGGCCCCGCCTCCACCGCCTGATCCCGTCCTCAGAATACAGCGTATGCATAAATTGGTCAATTTTTCTTAATATAGGCCTCTACTTTTTCACGACTCTACAACGAAAAATGCTAAAAATAAGATTGGAGAAATGCAGGACTCACACTTGAGTATATGGAATCTGTTGTCTATATACATTTTGCTGTAGTTGTAAGAGTTTTTATCTATTGTTTGTGGTATTATGCTCTTGAGATTGAACTTGCTTGCCTCCAAGTGTCCATATAGTCAGTCACTATAAACTTTTTAGTAATGCCATTAGAATTGGGGCTTATGTAACTCATCTCTTTCTTTTCTTTATCCTTTTCTCAAGAATTCAAATTTTTA

Network for GWHGAAEX018896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03169.14	OPT	35	655	8.70E-134

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	56.410
SRP064423	SRR2545915	Juvenile tuber	48.020
SRP108465	SRR5643513	five period of Gastrodia elata	72.150
	SRR5643514	five period of Gastrodia elata	67.790
	SRR5643515	five period of Gastrodia elata	56.110
	SRR5643524	five period of Gastrodia elata	65.770
	SRR5643525	five period of Gastrodia elata	80.230
	SRR5643528	five period of Gastrodia elata	47.340
	SRR5643658	five period of Gastrodia elata	73.640
	SRR5643659	five period of Gastrodia elata	68.400
	SRR5643660	five period of Gastrodia elata	69.900
	SRR5643661	five period of Gastrodia elata	75.680
	SRR5643662	five period of Gastrodia elata	68.700
	SRR5643663	five period of Gastrodia elata	73.310
	SRR5643664	five period of Gastrodia elata	73.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	100.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	131.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	106.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	112.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	131.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	144.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	113.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	131.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	118.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	139.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	118.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	118.880
SRP279888	Gastro	Gastrodia elata tuber	63.62
	Juven	Juvenile tuber	85.19
	Mother_Gastro	Mother tuber of Gastrodia elata	53.70
	Mother_Juven	Mother tuber of Juvenile	69.95