Gene detail

Detail information of GWHGAAEX018897/evm.TU.scaffold_99.110

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2526	Predicted aminopeptidases - M20/M25/M40 family
nr	gi\|672159799\|ref\|XP_008799665.1\|	PREDICTED: nicalin-like isoform X1 [Phoenix dactylifera]
trEMBL	tr\|D7TCR2\|D7TCR2_VITVI	Nicalin {ECO:0000256\|PIRNR:PIRNR011018}
TAIR	AT3G44330	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	1876404	1903483	+

Transcript Sequence
>GWHTAAEX018897 CTTAAATTTATATGCAAGTTTCGGTTGTCTGGCATTTCTGTTCCTACGGGACCAAGCGGACTGACGACAATGTTCGGGACAAGGAGAGGAGCAGTCTGCGGCGTTGTTCTGGAGCGGATCTATTCGATCATCGTTCTTGCCCTAGTCTTCATGGCCTGCGTCGAGCTTGGTGACGCCGCCACCGCTGTTAACGTTTACCGCCTGATTCAGTACGACATCGCCGGAGTGCCATTTGGATCTCGCCTCGCAGGCCTCAACCACCACGCCTGCTCTTCCCTCGCTTCTACCACTGCCGATCTCTCTCGAACCGTTTTCATTCTTCCCGTGCGCGAACTCAACCTAACACTTCTCAATGAGTATATAGCTAGGAAACAGCCATTAGGTGGATTGTTGCTTTTGCTTCCTGAAAGGACTGTTTCTAAAGAATCAAGGGCAAAGATGACTACTGACAGCATTCAAACTGATAGCCTATTGAGAAGCAGTTTGGTTGAGTTGGAAAAAGTTCTCGTGTACGAGTACATCCCTTATCCTGTGTATTTTGCATTTGAAAGTCATAAAATTAATTCCATTTTAGCTGATGTTCGTAAGAGTGATGCTACTGGTCAACCTGCTTCTGCAACAAGTGGCGGATACAAGCTGGTAGTGCCATCATGGGAGCCTAAAAAAGTATCATCTCCCACGTTCACAAACATTCAGGGATGGTTGCCTGGGCTAAAAGAAGATGATGGCGCTAATCATTTACCTACAATTGCAATAGTTGCATCCTATGATACTTTTGGTGCTGCTCCGGCCCTTTCAGTGGGGAGTGACAGCAATGGTAGTGGAGTTGTTGTGCTTTTGGAAATTGCTCGTCTTTTCTCACGTCTTTATTCCAATCCAAAGACAAGGGGGAGATTTAATCTACTTTTTGGGCTGACATCTGGTGGACCTTATAATTACAATGGAACTTTTAAGTGGCTGAGGAGTTTTGATCAACGAGTTAGAGAAAGCATTGACTACGCCATATGCTTGAATAGCATCGGCTCCTGGAATAATGAGTTGTGGGTTCATGTTTCAAAGCCGCCAGAAAATGCCTATATAAAGCAAGTGTTCGATGGTCTTTCAGATGTCGCACAAGATATGGGAATCAATATTGGCATAAACCATAAAAAAATTAATATCTCAAATCCTCGTGTTGCATGGGAACATGAGCAATTTTCTAGAGTAAGAGTAACTGCTTTGACACTTTCTGAACTTCCTGTTGCCCCCAAACTACTTGAAAGCTCAGGGGGTCTATATGATTCACGGGAATTTATAGATGAATCTGCAGTCTATAGAAGCGTGAAATTGGTTGCTGAAAGCGTTGCTAGGCATATTTATGGGCATCGAAGTAGAAATAATCAGATTTTTGCAGAAAACAGCAGTTTGGCTATCAGTCCTGCTTACATTACAATGTGGCTTGATCTTTTGTCCCGGACTCCTAGAGTGGCACCTTTTCTTCAGAAAACGGATCCATTCATCTCTGCCTTGAAAAAGGAATTATCAGATCACACAGTAGATGTGCTTGCACAACATGACATCATCGACGGCATGTTCAGTTTCTACGATTCGTCAAGTGCGACGCTCAATATTTACCAGGTAGCAAGTGTCACTTTTGATCTACTCTTGCTCCTAGTGCTTGGATCTTATATAATTCTTCTCTTCTGTATCCTTGTCATTGCCACAAGAGGTATTGATGATCTCATCAACATGCTCAGACGGCCGCCATCTCGGAAAGTTAAATCAGCATGATGATCTTCATATATAAATAGATCTCTGGTTATAAGTGGACACTGAATGATTCTCCTTTTGTTTCTATCCCTATGTAGGGCATTTTTTTTGCCAAGAACCTTAATTTATTTTTAAAATGCTGTAAAAATTTTGCTTAATTTTGAGATTTTTAAATTTTGCTTAGCATAAACATAGTAAATTTTTATGGTCACATGTCAAATTTACTTGAAAAATCTAGTGTTTAATTTGATACGAGTAATAAACAAATTGGGTTCGAGTATGTATTTTAGGTGATTAATATTTCAGCTAGGCTTTGGTTTGCTTTCCAAATAGCTTGAACCAACCCACATATCATGCTATTTAAATTTTCATGCCAAACTAAACTTTTGGATTTTATGGGGTAATTCAAACTTGACCTACTAAACC

Network for GWHGAAEX018897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05450.14	Nicastrin	227	365	6.50E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016485	Biological Process	protein processing
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.060
SRP064423	SRR2545915	Juvenile tuber	60.500
SRP108465	SRR5643513	five period of Gastrodia elata	42.560
	SRR5643514	five period of Gastrodia elata	39.420
	SRR5643515	five period of Gastrodia elata	41.500
	SRR5643524	five period of Gastrodia elata	44.930
	SRR5643525	five period of Gastrodia elata	36.710
	SRR5643528	five period of Gastrodia elata	37.710
	SRR5643658	five period of Gastrodia elata	30.590
	SRR5643659	five period of Gastrodia elata	55.720
	SRR5643660	five period of Gastrodia elata	59.490
	SRR5643661	five period of Gastrodia elata	59.140
	SRR5643662	five period of Gastrodia elata	53.580
	SRR5643663	five period of Gastrodia elata	56.410
	SRR5643664	five period of Gastrodia elata	55.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	47.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.920
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.310
SRP279888	Gastro	Gastrodia elata tuber	59.46
	Juven	Juvenile tuber	64.66
	Mother_Gastro	Mother tuber of Gastrodia elata	38.74
	Mother_Juven	Mother tuber of Juvenile	63.98