Detail information of GWHGAAEX018898/evm.TU.scaffold_99.111


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|146295422|ref|YP_001179193.1|8.00E-31galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
nrgi|743783253|ref|XP_010921359.1|0PREDICTED: polygalacturonase At1g48100-like [Elaeis guineensis]
Swissprottr|Q949Z1|PGLR4_ARATH2.00E-179Polygalacturonase At1g48100 (Precursor)
trEMBLtr|F6HZD4|F6HZD4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB60049.1}
TAIRAT1G024600Pectin lyase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009819038771906182-
Transcript Sequence

Network for GWHGAAEX018898

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00295.16Glyco_hydro_28994221.90E-86
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004650Molecular Functionpolygalacturonase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.330
SRR2545915Juvenile tuber0.830
SRP108465SRR5643513five period of Gastrodia elata5.610
SRR5643514five period of Gastrodia elata2.510
SRR5643515five period of Gastrodia elata1.280
SRR5643524five period of Gastrodia elata1.320
SRR5643525five period of Gastrodia elata0.480
SRR5643528five period of Gastrodia elata0.390
SRR5643658five period of Gastrodia elata0.460
SRR5643659five period of Gastrodia elata0.400
SRR5643660five period of Gastrodia elata0.100
SRR5643661five period of Gastrodia elata0.250
SRR5643662five period of Gastrodia elata0.050
SRR5643663five period of Gastrodia elata0.260
SRR5643664five period of Gastrodia elata0.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.180
SRR6049655Rhizomagastrodiae_C368-T10_good_17.200
SRR6049656Rhizomagastrodiae_C368-T07_good_12.740
SRR6049657Rhizomagastrodiae_C368-T07_good_11.220
SRR6049658Rhizomagastrodiae_C368-T04_good_11.110
SRR6049659Rhizomagastrodiae_C368-T04_good_11.470
SRR6049660Rhizomagastrodiae_C368-T01_good_12.090
SRR6049661Rhizomagastrodiae_C368-T04_good_11.880
SRR6049662Rhizomagastrodiae_C368-T01_good_15.440
SRR6049663Rhizomagastrodiae_C368-T01_good_13.180
SRR6049664Rhizomagastrodiae_C368-T10_good_16.240
SRR6049665Rhizomagastrodiae_C368-T10_good_16.240
SRP279888GastroGastrodia elata tuber 0.56
JuvenJuvenile tuber0.79
Mother_GastroMother tuber of Gastrodia elata 1.08
Mother_JuvenMother tuber of Juvenile 0.70