Detail information of GWHGAAEX018901/evm.TU.scaffold_99.114
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2577 | 1.00E-105 | Transcription factor E2F/dimerization partner (TDP) |
| nr | gi|743817954|ref|XP_010931084.1| | 0 | PREDICTED: transcription factor E2FB-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9FNY0|E2FA_ARATH | 2.00E-127 | Transcription factor E2FA |
| trEMBL | tr|F5A665|F5A665_COCNU | 0 | E2F protein {ECO:0000313|EMBL:AEB96141.1} |
| TAIR | AT2G36010 | 1.00E-105 | E2F transcription factor 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 2009262 | 2053398 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018901
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02319.19 | E2F_TDP | 144 | 207 | 4.10E-25 |
| PF16421.4 | E2F_CC-MB | 223 | 322 | 1.80E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06620 | E2F3 | Cell cycle | map04110 |
| Cellular senescence | map04218 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0005667 | Cellular Component | transcription factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.530 |
| SRR2545915 | Juvenile tuber | 7.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.480 |
| SRR5643514 | five period of Gastrodia elata | 8.830 | |
| SRR5643515 | five period of Gastrodia elata | 8.460 | |
| SRR5643524 | five period of Gastrodia elata | 9.980 | |
| SRR5643525 | five period of Gastrodia elata | 5.790 | |
| SRR5643528 | five period of Gastrodia elata | 4.890 | |
| SRR5643658 | five period of Gastrodia elata | 5.280 | |
| SRR5643659 | five period of Gastrodia elata | 12.010 | |
| SRR5643660 | five period of Gastrodia elata | 12.000 | |
| SRR5643661 | five period of Gastrodia elata | 12.290 | |
| SRR5643662 | five period of Gastrodia elata | 9.270 | |
| SRR5643663 | five period of Gastrodia elata | 10.390 | |
| SRR5643664 | five period of Gastrodia elata | 6.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.81 |
| Juven | Juvenile tuber | 12.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.57 | |
| Mother_Juven | Mother tuber of Juvenile | 21.11 |