Gene detail

Detail information of GWHGAAEX018908/evm.TU.scaffold_99.121

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743761059\|ref\|XP_010940336.1\|	1.59E-84	PREDICTED: uncharacterized protein LOC105058946 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0T6N1\|M0T6N1_MUSAM	1.00E-77	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P13330_001}
TAIR	AT3G22430	9.00E-31	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	2186464	2191400	-

Transcript Sequence
>GWHTAAEX018908 ATGCGAGGAAACCGTAGATTGCGTGGCGGCGGTGGAAGGGGTAGCCACAACGATCCTTCTTATAGATTGGAGGATTCCTTACGTCGTCTTTCTCATGGCAATCGGAACTCTTTTACACATGATATTAGGGTGAAAAAGAGGTCCGTTAAGGCTGTTGCTAATACCAGGAGTAGATCTGTTGTGTGGTCATTGGATCATCCATTCAATCACTCAGATCATGCAAATGAACTTGTGCATGAGGTTTCACCGGAACCTGATTTGCGCCATTATACTTTGCACCAACGGTCGCAGCTTCCCTCCTGGGAAAAGGGTTTTAAGTTCCAGGAGAAAGCCATTATATCAGATTATGCATCTGACGACCCCAGCTGGAAGTTTTGTCGACAGACAAAGAGCAGAGAATTGCATGAACGAATTGATGATCCTCTGCAAGAAATTTCTATTGGTTTTCAAGGGAATGGTATGGTTATGGAAAAATCAACGTTCTTTGAGGAAGGTTCTTCAAGTGGCTTCCACTCTAACCCTGCCTTGCGATCTACTATTGGGAGTGCAGAAGGGTTAGATAAGAGCGGTATTTTTGGCACAGGCATTCATGAAAGTAGGATGCATCATCATCATGTCCTTCATTTGGATCCATATGATGATGCTGACAGTGAGAAGGTTTATTCAAGTGATTTATCTATGCCTTCCTTTCATCTGAGGTCTTTTAACCGTGCTTCTTCATCTAACATAATAAAGGAAGGTCATCATCATCATCATCATCATGGTTTCCATAGAAATTTATGTGATGATGTGGAAAGGAAGAAGGTTTATTCTAGAGATTCATTTTTGCCTAAAATGCATCCTTTTCAGCCAAGACCTCTTGGCAGTACTTCTTCAACTAGCACAGAAAAGGAAGACCAACATCACCACGTCGTTTATAGAGATTCATATGAAAGTATGGACAAGAAGAGGGTTTATTCTAGAAGCTCATCTGTGGTGCACCCCTCCCAGCCAAGGTCTATTAACTTCACTTCTTCATCAGCCAGGGCTGAGGAAGAGCATCACTGTCATAGACCCCATAGGGATTCATCTGAGACTGTGGACATGAAGAGTGTTTATTCCTCATCTTTGCCTAAAACTCATCCTTATCGGCCTCAGCCTCTTGGCTGTACTTCATCTAGCATAGTAAAGGAAGAACACCATCATCATGATCTTCACTCATATGATGACATAGGCTGGGAAAATGTTTATTCTAGAGATTCATCTTTATCTAAAAAGCATTCCTTTCAGCCAATGCATTTTGTCTCTGCTTCATCATCTAATATAGTGAAGGAAGATGCCACAGCAAAGCCTATTGAGCACATGCTAGATGAGCTTCCTCCAGATATAAGCAGGTATCCAAATGTCTCTTCGAAAACTAATGCCCACATGGAATTGTTACTCTCTGGCTTGCCAGCAAAAAATGGTACATGTGATATGAGCCAAGCATACAGTCATGAGCCGCATAGCCAGAGAAGGCAGGATAGCTTTAGGTACCTTGCTCCTGAGAATCTCTCTAGAAGGGCCACATGTGTTTATCAGAGTGAATTTGAAGATGCTGTTGATACTACATTCTTGGATAATTCAGTTGTTAGGATTGGCACTGCAGATGCTTCACGTAGGCATTTGGTTGATGGAATTTTGTTGAACCAGCATCATTCATTACATGGAGATACTGATCCAGACGAACATCATCAGATTGTGACTACATGCTTGGATAATTCAATTGTTAGGATTGGCACTGCTGATGCTTCACGTAGGCATTTAATTGATGGAATTTTGTTGGACCGGCATCAGTCATTACATGGAGATACTGATCCAGACCAGCATCATCAGATTATGAGGACTGCCTGTGAAGTGTTTCCATCTGAATCTTACAGTGAATGTGCTAGATTTAAATTTAAATCATCTAATGATCATAAGAACGTGCCATCTGATAAGATGTATAGCTGTCATGAAAGTGATGGTCCTCCAGTGGATTATGAAGAACATAGGACCGGGAATGCTTTTTTGTCAGATACTCGTATTGATATTCATCATCAGGGCAATGATCTTTTTCACGGCAGGGCATTGAATAAAAGCTTAATTGATCAGAATATAGAAAGGGTGGAAACTCCTCATTATTCCATCAATGGAAATATCGATGAAACTGATTTACATAACATGCATTTAAATGTGCAAAGCGCTCTTGTTGGGAAGTCTTCATGTTGGAATGAGGAGATGCCATCAAATGAAAAGCCAGTTAGGTTGCCGTCATCTGAAAGAATGCTTTTTGAGCATAACCACAGCAAGAATTTCTCTCATAGACAGCTTAGATCTGATACGTTGATGCATTCTCCCGGCATTACTTTAAAAAAGAAGTGCTTAAAAGGTGGCCTTGTGGTCCATGACTTATTTCCTTCTGAAGAAAAACAAGGCTTGATAAGGCCTTGCAAGCATAGGAAGAGAAGCCCTGTTGAAAGGCCTGTTTCTCAAAATGAATTGTTTGATTACAAAAGTAACAGTTCTACAAAGAAGCATAGGAAGAGAAGCCCGGATGAAAGGCCTGGTTCTCAATATGAATTGTTTGATGACAAAAGTAACAGTTTTGCAAAGACTGATCCGCCCGAAGGTTCAGAAGAGTTTAAAAATTTAGTGTACAAATCTTTTCTGCAGTATTCAAAGCTGTTGAATGAGACACTACATCGTCAAAGCATATTAGAAGGTCAACAAGAATCTAAAAAACTGCAGTGCCTTGTGTGCGGAAGTAAGTCGAAAAAGTTTGCCAGCACGTTCTGCTTAGCGAATCACGCTTTCCACTCTCTCAAGATTGGTTTAAGGACTGCACATTTGGGCTTCTACAAATCTTTATGCGTTCTTATGGGTTGGAACTGGAATGCATCTCCCGATAAGTGGAGGGCATATCAGACCGAACCTTTTCCGGAGGCCAAAGCTCTCCGAGAAGACCTCATCTTGTGGCCTCCAGTTGTCATTATCCACAACATTTCTATGGGAAACAAAAGCTCAACTGTTGAGGACATTGAAAAGCTTCTGCAAGATATGGGCGTTGATGCACGAAAGGCTCGTGTCGGCCTCGGCAACCCTCCGAATCAGAGCTTATTCTTGGCCAAGTTCACTGCCACTCTCTCCGGCCTGCGAGAAGCTGAGAAGCTCCACCGCTTGTTCGCTGATAGGGAATGCGGGAAGCCGGAATTTGAACTCGTCCTAGCGTCCCACGATTGCTGCGCCGCAGAAAATGGGGAGATCCGGCACGACTGTGTCTACGCCTACATGGCTCTTGCGGAGGACTTGGACAAGCTCGATCGTGTCACTAAGAAGAGGTCCATGCTCAAGAGCAAGAGGGACATTGAGGCGATTGCTGACGCCCCCATCGTTGCGGTTTGAGGCTTCTCGCATTCGGTGTTTTGGATAAAAGTTTTGATGTGGCTTAGCGGTTGAGGTCTTTTTGACAGGTCAAATATTTAAATTTCACCGGCCATATAGTTGCCATATAAATCTCACAACTTATTTTTCAAAAGAAGACAGTATTGATGAGTTGGCATTTTGAGAAAGGCTAGTGAGTGAGTGCTAGGGTGCTCCAACTTGAGGAAGTGCGTAAGCAAGTGGAAAGAACTAATTTATATTATATTTTTGGGGCTTTTGGGATAGCGCTCGCTGTATTTTTTGATTTTTATTTGTTATATTGATTTGCTAATGCATCAAGAAATCTGTGGGGGAGTATTTTGGGTTCAATTGTTTAGGGCAGAAATTCAAGCGATAGTTTGAAAAAAATATGTACAATTGCTGTTGGAAGAATGATGAGTCTTAGTGAGCTGAATGCTCTTGCTGACTTCAACTCTTTAGCTTCTCTAAGGTATTTTGAATA

Network for GWHGAAEX018908

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03468.13	XS	987	1104	1.40E-14

Protein Sequence

>GWHPAAEX018908
MRGNRRLRGGGGRGSHNDPSYRLEDSLRRLSHGNRNSFTHDIRVKKRSVKAVANTRSRSVVWSLDHPFNHSDHANELVHEVSPEPDLRHYTLHQRSQLPSWEKGFKFQEKAIISDYASDDPSWKFCRQTKSRELHERIDDPLQEISIGFQGNGMVMEKSTFFEEGSSSGFHSNPALRSTIGSAEGLDKSGIFGTGIHESRMHHHHVLHLDPYDDADSEKVYSSDLSMPSFHLRSFNRASSSNIIKEGHHHHHHHGFHRNLCDDVERKKVYSRDSFLPKMHPFQPRPLGSTSSTSTEKEDQHHHVVYRDSYESMDKKRVYSRSSSVVHPSQPRSINFTSSSARAEEEHHCHRPHRDSSETVDMKSVYSSSLPKTHPYRPQPLGCTSSSIVKEEHHHHDLHSYDDIGWENVYSRDSSLSKKHSFQPMHFVSASSSNIVKEDATAKPIEHMLDELPPDISRYPNVSSKTNAHMELLLSGLPAKNGTCDMSQAYSHEPHSQRRQDSFRYLAPENLSRRATCVYQSEFEDAVDTTFLDNSVVRIGTADASRRHLVDGILLNQHHSLHGDTDPDEHHQIVTTCLDNSIVRIGTADASRRHLIDGILLDRHQSLHGDTDPDQHHQIMRTACEVFPSESYSECARFKFKSSNDHKNVPSDKMYSCHESDGPPVDYEEHRTGNAFLSDTRIDIHHQGNDLFHGRALNKSLIDQNIERVETPHYSINGNIDETDLHNMHLNVQSALVGKSSCWNEEMPSNEKPVRLPSSERMLFEHNHSKNFSHRQLRSDTLMHSPGITLKKKCLKGGLVVHDLFPSEEKQGLIRPCKHRKRSPVERPVSQNELFDYKSNSSTKKHRKRSPDERPGSQYELFDDKSNSFAKTDPPEGSEEFKNLVYKSFLQYSKLLNETLHRQSILEGQQESKKLQCLVCGSKSKKFASTFCLANHAFHSLKIGLRTAHLGFYKSLCVLMGWNWNASPDKWRAYQTEPFPEAKALREDLILWPPVVIIHNISMGNKSSTVEDIEKLLQDMGVDARKARVGLGNPPNQSLFLAKFTATLSGLREAEKLHRLFADRECGKPEFELVLASHDCCAAENGEIRHDCVYAYMALAEDLDKLDRVTKKRSMLKSKRDIEAIADAPIVAV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0031047	Biological Process	gene silencing by RNA

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	62.050
SRP064423	SRR2545915	Juvenile tuber	40.510
SRP108465	SRR5643513	five period of Gastrodia elata	18.060
	SRR5643514	five period of Gastrodia elata	15.580
	SRR5643515	five period of Gastrodia elata	15.180
	SRR5643524	five period of Gastrodia elata	15.270
	SRR5643525	five period of Gastrodia elata	25.720
	SRR5643528	five period of Gastrodia elata	31.930
	SRR5643658	five period of Gastrodia elata	18.910
	SRR5643659	five period of Gastrodia elata	27.140
	SRR5643660	five period of Gastrodia elata	33.060
	SRR5643661	five period of Gastrodia elata	25.790
	SRR5643662	five period of Gastrodia elata	28.470
	SRR5643663	five period of Gastrodia elata	32.920
	SRR5643664	five period of Gastrodia elata	31.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.590
SRP279888	Gastro	Gastrodia elata tuber	35.52
	Juven	Juvenile tuber	29.91
	Mother_Gastro	Mother tuber of Gastrodia elata	22.00
	Mother_Juven	Mother tuber of Juvenile	22.51