Detail information of GWHGAAEX018909/evm.TU.scaffold_99.122
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|404496600|ref|YP_006720706.1| | 1.00E-67 | histone deacetylase family protein [Geobacter metallireducens GS-15] |
| KOG | KOG1342 | 0 | Histone deacetylase complex, catalytic component RPD3 |
| nr | gi|743761051|ref|XP_010940301.1| | 0 | PREDICTED: histone deacetylase 9 [Elaeis guineensis] |
| Swissprot | tr|Q8H0W2|HDA9_ARATH | 0 | Histone deacetylase 9 |
| trEMBL | tr|A0A067KET5|A0A067KET5_JATCU | 0 | Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913} |
| TAIR | AT3G44680 | 0 | histone deacetylase 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 2192672 | 2234298 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018909
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00850.18 | Hist_deacetyl | 24 | 315 | 5.80E-83 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06067 | HDAC1_2 | Notch signaling pathway | map04330 |
| Cell cycle | map04110 | ||
| Thyroid hormone signaling pathway | map04919 | ||
| Longevity regulating pathway - multiple species | map04213 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016575 | Biological Process | histone deacetylation |
| GO:0004407 | Molecular Function | histone deacetylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 40.610 |
| SRR2545915 | Juvenile tuber | 25.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.500 |
| SRR5643514 | five period of Gastrodia elata | 11.680 | |
| SRR5643515 | five period of Gastrodia elata | 12.270 | |
| SRR5643524 | five period of Gastrodia elata | 11.000 | |
| SRR5643525 | five period of Gastrodia elata | 23.600 | |
| SRR5643528 | five period of Gastrodia elata | 22.790 | |
| SRR5643658 | five period of Gastrodia elata | 24.020 | |
| SRR5643659 | five period of Gastrodia elata | 13.670 | |
| SRR5643660 | five period of Gastrodia elata | 14.880 | |
| SRR5643661 | five period of Gastrodia elata | 10.930 | |
| SRR5643662 | five period of Gastrodia elata | 13.780 | |
| SRR5643663 | five period of Gastrodia elata | 13.770 | |
| SRR5643664 | five period of Gastrodia elata | 13.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.860 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.860 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.19 |
| Juven | Juvenile tuber | 10.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.64 | |
| Mother_Juven | Mother tuber of Juvenile | 9.21 |