Detail information of GWHGAAEX018919/evm.TU.scaffold_99.133


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427716825|ref|YP_007064819.1|4.00E-26ribosome-binding factor A [Calothrix sp. PCC 7507]
nrgi|743854646|ref|XP_010940991.1|4.48E-67PREDICTED: probable ribosome-binding factor A, chloroplastic [Elaeis guineensis]
Swissprottr|O65693|RBFA_ARATH4.00E-65Probable ribosome-binding factor A, chloroplastic (Precursor)
trEMBLtr|M4D500|M4D500_BRARP5.00E-65Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra011557.1-P}
TAIRAT4G347309.00E-58ribosome-binding factor A family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009823653552391466-
Transcript Sequence

Network for GWHGAAEX018919

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02033.17RBFA601775.70E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006364Biological ProcessrRNA processing

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.310
SRR2545915Juvenile tuber9.610
SRP108465SRR5643513five period of Gastrodia elata8.800
SRR5643514five period of Gastrodia elata12.670
SRR5643515five period of Gastrodia elata8.270
SRR5643524five period of Gastrodia elata11.850
SRR5643525five period of Gastrodia elata11.260
SRR5643528five period of Gastrodia elata7.610
SRR5643658five period of Gastrodia elata5.280
SRR5643659five period of Gastrodia elata10.420
SRR5643660five period of Gastrodia elata13.090
SRR5643661five period of Gastrodia elata13.650
SRR5643662five period of Gastrodia elata18.030
SRR5643663five period of Gastrodia elata16.220
SRR5643664five period of Gastrodia elata19.430
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.510
SRR6049655Rhizomagastrodiae_C368-T10_good_14.290
SRR6049656Rhizomagastrodiae_C368-T07_good_18.190
SRR6049657Rhizomagastrodiae_C368-T07_good_18.270
SRR6049658Rhizomagastrodiae_C368-T04_good_17.750
SRR6049659Rhizomagastrodiae_C368-T04_good_17.790
SRR6049660Rhizomagastrodiae_C368-T01_good_16.310
SRR6049661Rhizomagastrodiae_C368-T04_good_15.310
SRR6049662Rhizomagastrodiae_C368-T01_good_16.690
SRR6049663Rhizomagastrodiae_C368-T01_good_14.780
SRR6049664Rhizomagastrodiae_C368-T10_good_19.010
SRR6049665Rhizomagastrodiae_C368-T10_good_19.010
SRP279888GastroGastrodia elata tuber 21.05
JuvenJuvenile tuber21.56
Mother_GastroMother tuber of Gastrodia elata 7.63
Mother_JuvenMother tuber of Juvenile 13.09