Detail information of GWHGAAEX018929/evm.TU.scaffold_99.145
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|119946961|ref|YP_944641.1| | 1.00E-104 | 2-hydroxy-3-oxopropionate reductase [Psychromonas ingrahamii 37] |
| KOG | KOG0409 | 1.00E-153 | Predicted dehydrogenase |
| nr | gi|225468850|ref|XP_002266252.1| | 2.59E-162 | PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Vitis vinifera] |
| Swissprot | tr|Q9LSV0|GLYR1_ARATH | 4.00E-154 | Glyoxylate/succinic semialdehyde reductase 1 |
| trEMBL | tr|A5BEM8|A5BEM8_VITVI | 1.00E-162 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN78910.1} |
| TAIR | AT3G25530 | 1.00E-153 | glyoxylate reductase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 2626920 | 2667493 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018929
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03446.14 | NAD_binding_2 | 2 | 158 | 1.50E-41 |
| PF14833.5 | NAD_binding_11 | 164 | 281 | 2.10E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0051287 | Molecular Function | NAD binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0050661 | Molecular Function | NADP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.020 |
| SRR2545915 | Juvenile tuber | 28.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 63.790 |
| SRR5643514 | five period of Gastrodia elata | 84.970 | |
| SRR5643515 | five period of Gastrodia elata | 65.780 | |
| SRR5643524 | five period of Gastrodia elata | 82.530 | |
| SRR5643525 | five period of Gastrodia elata | 33.800 | |
| SRR5643528 | five period of Gastrodia elata | 28.020 | |
| SRR5643658 | five period of Gastrodia elata | 27.960 | |
| SRR5643659 | five period of Gastrodia elata | 25.210 | |
| SRR5643660 | five period of Gastrodia elata | 21.970 | |
| SRR5643661 | five period of Gastrodia elata | 21.390 | |
| SRR5643662 | five period of Gastrodia elata | 22.040 | |
| SRR5643663 | five period of Gastrodia elata | 22.760 | |
| SRR5643664 | five period of Gastrodia elata | 18.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 49.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 73.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 73.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.07 |
| Juven | Juvenile tuber | 55.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.88 | |
| Mother_Juven | Mother tuber of Juvenile | 38.84 |