Detail information of GWHGAAEX018933/evm.TU.scaffold_99.150


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189502744|ref|YP_001958461.1|6.00E-10hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
KOGKOG46426.00E-112Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats)
nrgi|743765018|ref|XP_010912726.1|2.68E-133PREDICTED: E3 ubiquitin-protein ligase CHIP-like isoform X1 [Elaeis guineensis]
Swissprottr|Q9SRS9|CHIP_ARATH2.00E-112E3 ubiquitin-protein ligase CHIP {ECO:0000305}
trEMBLtr|V4SRM2|V4SRM2_9ROSI2.00E-125Uncharacterized protein {ECO:0000313|EMBL:ESR50473.1}
TAIRAT3G073706.00E-112carboxyl terminus of HSC70-interacting protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009827252522753538-
Transcript Sequence

Network for GWHGAAEX018933

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12895.6ANAPC3461061.30E-07
PF04564.14U-box2022741.70E-26
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K09561STUB1, CHIP Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120

Gene Ontology

GO term OntologyName
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.190
SRR2545915Juvenile tuber14.350
SRP108465SRR5643513five period of Gastrodia elata10.670
SRR5643514five period of Gastrodia elata14.010
SRR5643515five period of Gastrodia elata12.190
SRR5643524five period of Gastrodia elata13.300
SRR5643525five period of Gastrodia elata19.890
SRR5643528five period of Gastrodia elata19.750
SRR5643658five period of Gastrodia elata22.310
SRR5643659five period of Gastrodia elata12.030
SRR5643660five period of Gastrodia elata12.980
SRR5643661five period of Gastrodia elata11.300
SRR5643662five period of Gastrodia elata13.000
SRR5643663five period of Gastrodia elata15.520
SRR5643664five period of Gastrodia elata16.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.700
SRR6049655Rhizomagastrodiae_C368-T10_good_117.380
SRR6049656Rhizomagastrodiae_C368-T07_good_19.080
SRR6049657Rhizomagastrodiae_C368-T07_good_111.080
SRR6049658Rhizomagastrodiae_C368-T04_good_18.580
SRR6049659Rhizomagastrodiae_C368-T04_good_18.980
SRR6049660Rhizomagastrodiae_C368-T01_good_111.500
SRR6049661Rhizomagastrodiae_C368-T04_good_18.230
SRR6049662Rhizomagastrodiae_C368-T01_good_111.010
SRR6049663Rhizomagastrodiae_C368-T01_good_19.330
SRR6049664Rhizomagastrodiae_C368-T10_good_110.630
SRR6049665Rhizomagastrodiae_C368-T10_good_110.630
SRP279888GastroGastrodia elata tuber 23.72
JuvenJuvenile tuber19.04
Mother_GastroMother tuber of Gastrodia elata 19.59
Mother_JuvenMother tuber of Juvenile 23.94