Detail information of GWHGAAEX018940/evm.TU.scaffold_99.157


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|336116845|ref|YP_004571612.1|1.00E-169citrate synthase [Microlunatus phosphovorus NM-1]
KOGKOG26170Citrate synthase
nrgi|695065382|ref|XP_009421277.1|0PREDICTED: citrate synthase 3, peroxisomal-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LXS6|CISY2_ARATH0Citrate synthase 2, peroxisomal (Precursor)
trEMBLtr|W9QZR2|W9QZR2_9ROSA0Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}
TAIRAT3G587500citrate synthase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009828544902891240+
Transcript Sequence

Network for GWHGAAEX018940

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00285.20Citrate_synt1034717.00E-132
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01647CS, gltA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Glyoxylate and dicarboxylate metabolismmap00630

Gene Ontology

GO term OntologyName
GO:0006099Biological Processtricarboxylic acid cycle
GO:0046912Molecular Functiontransferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms49.760
SRR2545915Juvenile tuber64.730
SRP108465SRR5643513five period of Gastrodia elata110.660
SRR5643514five period of Gastrodia elata132.060
SRR5643515five period of Gastrodia elata107.790
SRR5643524five period of Gastrodia elata142.440
SRR5643525five period of Gastrodia elata127.380
SRR5643528five period of Gastrodia elata135.950
SRR5643658five period of Gastrodia elata195.580
SRR5643659five period of Gastrodia elata86.070
SRR5643660five period of Gastrodia elata72.150
SRR5643661five period of Gastrodia elata88.130
SRR5643662five period of Gastrodia elata70.700
SRR5643663five period of Gastrodia elata83.470
SRR5643664five period of Gastrodia elata72.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_195.270
SRR6049655Rhizomagastrodiae_C368-T10_good_1100.580
SRR6049656Rhizomagastrodiae_C368-T07_good_1110.450
SRR6049657Rhizomagastrodiae_C368-T07_good_188.920
SRR6049658Rhizomagastrodiae_C368-T04_good_182.340
SRR6049659Rhizomagastrodiae_C368-T04_good_179.590
SRR6049660Rhizomagastrodiae_C368-T01_good_197.750
SRR6049661Rhizomagastrodiae_C368-T04_good_188.800
SRR6049662Rhizomagastrodiae_C368-T01_good_1138.100
SRR6049663Rhizomagastrodiae_C368-T01_good_1124.440
SRR6049664Rhizomagastrodiae_C368-T10_good_1140.910
SRR6049665Rhizomagastrodiae_C368-T10_good_1140.910
SRP279888GastroGastrodia elata tuber 84.60
JuvenJuvenile tuber152.56
Mother_GastroMother tuber of Gastrodia elata 98.59
Mother_JuvenMother tuber of Juvenile 121.01