Detail information of GWHGAAEX018941/evm.TU.scaffold_99.158
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|258405978|ref|YP_003198720.1| | 0 | ATP-dependent chaperone ClpB [Desulfohalobium retbaense DSM 5692] |
| KOG | KOG1051 | 0 | Chaperone HSP104 and related ATP-dependent Clp proteases |
| nr | gi|672169193|ref|XP_008804619.1| | 0 | PREDICTED: chaperone protein ClpB1-like [Phoenix dactylifera] |
| Swissprot | tr|P42730|CLPB1_ARATH | 0 | Chaperone protein ClpB1 |
| trEMBL | tr|V4TVM6|V4TVM6_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR53971.1} |
| TAIR | AT1G74310 | 0 | heat shock protein 101 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000098 | 2891506 | 2895013 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018941
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02861.19 | Clp_N | 66 | 107 | 1.80E-07 |
| PF02861.19 | Clp_N | 144 | 194 | 3.60E-08 |
| PF00004.28 | AAA | 252 | 365 | 3.90E-13 |
| PF07724.13 | AAA_2 | 647 | 811 | 7.50E-52 |
| PF10431.8 | ClpB_D2-small | 817 | 896 | 2.90E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03695 | clpB | Longevity regulating pathway - multiple species | map04213 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019538 | Biological Process | protein metabolic process |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 50.880 |
| SRR2545915 | Juvenile tuber | 609.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.440 |
| SRR5643514 | five period of Gastrodia elata | 19.400 | |
| SRR5643515 | five period of Gastrodia elata | 26.940 | |
| SRR5643524 | five period of Gastrodia elata | 21.510 | |
| SRR5643525 | five period of Gastrodia elata | 194.790 | |
| SRR5643528 | five period of Gastrodia elata | 222.100 | |
| SRR5643658 | five period of Gastrodia elata | 26.810 | |
| SRR5643659 | five period of Gastrodia elata | 111.470 | |
| SRR5643660 | five period of Gastrodia elata | 113.700 | |
| SRR5643661 | five period of Gastrodia elata | 133.010 | |
| SRR5643662 | five period of Gastrodia elata | 96.850 | |
| SRR5643663 | five period of Gastrodia elata | 115.530 | |
| SRR5643664 | five period of Gastrodia elata | 89.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 55.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 46.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 40.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 39.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 54.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 86.97 |
| Juven | Juvenile tuber | 95.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 116.30 | |
| Mother_Juven | Mother tuber of Juvenile | 77.15 |