Detail information of GWHGAAEX018947/evm.TU.scaffold_99.164


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672180886|ref|XP_008810647.1|1.43E-83PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1 [Phoenix dactylifera]
Swissprottr|Q9XI47|SHH1_ARATH7.00E-56Protein SAWADEE HOMEODOMAIN HOMOLOG 1
trEMBLtr|D7STG8|D7STG8_VITVI1.00E-68Putative uncharacterized protein {ECO:0000313|EMBL:CBI20567.3}
TAIRAT3G183803.00E-46sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009831083793188631+
Transcript Sequence

Network for GWHGAAEX018947

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16719.4SAWADEE1212475.60E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.480
SRR2545915Juvenile tuber41.810
SRP108465SRR5643513five period of Gastrodia elata18.500
SRR5643514five period of Gastrodia elata21.770
SRR5643515five period of Gastrodia elata20.040
SRR5643524five period of Gastrodia elata19.070
SRR5643525five period of Gastrodia elata12.180
SRR5643528five period of Gastrodia elata14.630
SRR5643658five period of Gastrodia elata13.970
SRR5643659five period of Gastrodia elata23.680
SRR5643660five period of Gastrodia elata24.740
SRR5643661five period of Gastrodia elata26.570
SRR5643662five period of Gastrodia elata25.400
SRR5643663five period of Gastrodia elata25.070
SRR5643664five period of Gastrodia elata22.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.370
SRR6049655Rhizomagastrodiae_C368-T10_good_124.230
SRR6049656Rhizomagastrodiae_C368-T07_good_117.390
SRR6049657Rhizomagastrodiae_C368-T07_good_122.570
SRR6049658Rhizomagastrodiae_C368-T04_good_112.940
SRR6049659Rhizomagastrodiae_C368-T04_good_113.800
SRR6049660Rhizomagastrodiae_C368-T01_good_113.000
SRR6049661Rhizomagastrodiae_C368-T04_good_110.840
SRR6049662Rhizomagastrodiae_C368-T01_good_115.480
SRR6049663Rhizomagastrodiae_C368-T01_good_110.870
SRR6049664Rhizomagastrodiae_C368-T10_good_119.150
SRR6049665Rhizomagastrodiae_C368-T10_good_119.150
SRP279888GastroGastrodia elata tuber 32.57
JuvenJuvenile tuber20.05
Mother_GastroMother tuber of Gastrodia elata 19.59
Mother_JuvenMother tuber of Juvenile 18.88